Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3116 and GFF3117 are separated by 5 nucleotides GFF3117 and GFF3118 overlap by 14 nucleotides
GFF3116 - Peptide chain release factor 2 @ programmed frameshift-containing, at 542,902 to 543,804
GFF3116
GFF3117 - Beta-phosphoglucomutase (EC 5.4.2.6), at 543,810 to 544,508
GFF3117
GFF3118 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 544,495 to 547,188
GFF3118
Position (kb) 543
544
545 Strain fitness (log2 ratio) -1
0
1
2 at 543.802 kb on + strand at 544.068 kb on + strand, within GFF3117 at 544.068 kb on + strand, within GFF3117 at 544.068 kb on + strand, within GFF3117 at 544.068 kb on + strand, within GFF3117 at 544.068 kb on + strand, within GFF3117 at 544.068 kb on + strand, within GFF3117 at 544.069 kb on - strand, within GFF3117 at 544.069 kb on - strand, within GFF3117 at 544.069 kb on - strand, within GFF3117 at 544.069 kb on - strand, within GFF3117 at 544.069 kb on - strand, within GFF3117 at 544.102 kb on + strand, within GFF3117 at 544.103 kb on - strand, within GFF3117 at 544.455 kb on + strand at 544.546 kb on + strand at 544.547 kb on - strand at 544.562 kb on - strand at 544.897 kb on + strand, within GFF3118 at 544.898 kb on - strand, within GFF3118 at 544.930 kb on + strand, within GFF3118 at 544.930 kb on + strand, within GFF3118 at 545.062 kb on + strand, within GFF3118 at 545.062 kb on + strand, within GFF3118 at 545.063 kb on - strand, within GFF3118 at 545.149 kb on + strand, within GFF3118 at 545.149 kb on + strand, within GFF3118 at 545.150 kb on - strand, within GFF3118 at 545.150 kb on - strand, within GFF3118 at 545.332 kb on + strand, within GFF3118 at 545.332 kb on + strand, within GFF3118 at 545.332 kb on + strand, within GFF3118 at 545.332 kb on + strand, within GFF3118 at 545.332 kb on + strand, within GFF3118 at 545.333 kb on - strand, within GFF3118 at 545.333 kb on - strand, within GFF3118 at 545.333 kb on - strand, within GFF3118 at 545.371 kb on + strand, within GFF3118 at 545.404 kb on + strand, within GFF3118 at 545.404 kb on + strand, within GFF3118 at 545.404 kb on + strand, within GFF3118
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 543,802 + +0.5 544,068 + GFF3117 0.37 +0.9 544,068 + GFF3117 0.37 +0.5 544,068 + GFF3117 0.37 +0.7 544,068 + GFF3117 0.37 +0.2 544,068 + GFF3117 0.37 -0.3 544,068 + GFF3117 0.37 +1.2 544,069 - GFF3117 0.37 +0.4 544,069 - GFF3117 0.37 -0.7 544,069 - GFF3117 0.37 -0.2 544,069 - GFF3117 0.37 -0.4 544,069 - GFF3117 0.37 +0.4 544,102 + GFF3117 0.42 -0.2 544,103 - GFF3117 0.42 -0.4 544,455 + -0.6 544,546 + +0.1 544,547 - -1.2 544,562 - -0.0 544,897 + GFF3118 0.15 -0.4 544,898 - GFF3118 0.15 -1.0 544,930 + GFF3118 0.16 -0.8 544,930 + GFF3118 0.16 -0.6 545,062 + GFF3118 0.21 -0.2 545,062 + GFF3118 0.21 +1.3 545,063 - GFF3118 0.21 -0.5 545,149 + GFF3118 0.24 -1.0 545,149 + GFF3118 0.24 -0.1 545,150 - GFF3118 0.24 -0.7 545,150 - GFF3118 0.24 -1.1 545,332 + GFF3118 0.31 -0.2 545,332 + GFF3118 0.31 -0.7 545,332 + GFF3118 0.31 +1.6 545,332 + GFF3118 0.31 -1.0 545,332 + GFF3118 0.31 -1.2 545,333 - GFF3118 0.31 -1.0 545,333 - GFF3118 0.31 +1.6 545,333 - GFF3118 0.31 -1.2 545,371 + GFF3118 0.33 -0.3 545,404 + GFF3118 0.34 -0.4 545,404 + GFF3118 0.34 +1.8 545,404 + GFF3118 0.34 -0.1
Or see this region's nucleotide sequence