Strain Fitness in Variovorax sp. SCN45 around GFF3113

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3111 and GFF3112 are separated by 34 nucleotidesGFF3112 and GFF3113 are separated by 34 nucleotidesGFF3113 and GFF3114 overlap by 8 nucleotides GFF3111 - hypothetical protein, at 538,662 to 539,012 GFF3111 GFF3112 - Methionine ABC transporter substrate-binding protein, at 539,047 to 539,883 GFF3112 GFF3113 - Methionine ABC transporter permease protein, at 539,918 to 540,580 GFF3113 GFF3114 - Methionine ABC transporter ATP-binding protein, at 540,573 to 541,460 GFF3114 Position (kb) 539 540 541Strain fitness (log2 ratio) -2 -1 0 1 2 3at 538.995 kb on + strandat 539.048 kb on + strandat 539.048 kb on + strandat 539.048 kb on + strandat 539.049 kb on - strandat 539.049 kb on - strandat 539.072 kb on + strandat 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.273 kb on + strand, within GFF3112at 539.273 kb on + strand, within GFF3112at 539.514 kb on - strand, within GFF3112at 539.514 kb on - strand, within GFF3112at 539.591 kb on + strand, within GFF3112at 539.592 kb on - strand, within GFF3112at 539.657 kb on + strand, within GFF3112at 539.658 kb on - strand, within GFF3112at 539.658 kb on - strand, within GFF3112at 539.658 kb on - strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.688 kb on - strand, within GFF3112at 539.688 kb on - strand, within GFF3112at 539.688 kb on - strand, within GFF3112at 539.898 kb on - strandat 539.898 kb on - strandat 539.898 kb on - strandat 539.898 kb on - strandat 539.901 kb on + strandat 539.901 kb on + strandat 539.901 kb on + strandat 539.901 kb on + strandat 539.902 kb on - strandat 539.902 kb on - strandat 539.902 kb on - strandat 539.902 kb on - strandat 539.972 kb on + strandat 539.972 kb on + strandat 539.973 kb on - strandat 539.973 kb on - strandat 540.027 kb on + strand, within GFF3113at 540.027 kb on + strand, within GFF3113at 540.028 kb on - strand, within GFF3113at 540.028 kb on - strand, within GFF3113at 540.030 kb on + strand, within GFF3113at 540.031 kb on - strand, within GFF3113at 540.093 kb on + strand, within GFF3113at 540.093 kb on + strand, within GFF3113at 540.094 kb on - strand, within GFF3113at 540.264 kb on + strand, within GFF3113at 540.264 kb on + strand, within GFF3113at 540.265 kb on - strand, within GFF3113at 540.265 kb on - strand, within GFF3113at 540.265 kb on - strand, within GFF3113at 540.580 kb on + strandat 540.580 kb on + strandat 540.581 kb on - strandat 540.581 kb on - strandat 541.000 kb on + strand, within GFF3114at 541.000 kb on + strand, within GFF3114at 541.521 kb on + strandat 541.522 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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538,995 + +0.4
539,048 + -0.8
539,048 + -0.1
539,048 + -0.7
539,049 - -0.3
539,049 - +1.2
539,072 + +1.0
539,189 + GFF3112 0.17 -0.5
539,189 + GFF3112 0.17 -0.4
539,189 + GFF3112 0.17 +1.3
539,189 + GFF3112 0.17 -0.3
539,189 + GFF3112 0.17 -0.2
539,190 - GFF3112 0.17 -0.2
539,190 - GFF3112 0.17 +0.8
539,190 - GFF3112 0.17 +2.8
539,190 - GFF3112 0.17 -0.3
539,190 - GFF3112 0.17 -0.4
539,190 - GFF3112 0.17 +0.6
539,192 + GFF3112 0.17 +0.1
539,192 + GFF3112 0.17 -0.7
539,192 + GFF3112 0.17 -0.7
539,193 - GFF3112 0.17 +0.0
539,193 - GFF3112 0.17 +0.6
539,193 - GFF3112 0.17 -1.2
539,193 - GFF3112 0.17 +3.7
539,193 - GFF3112 0.17 -1.2
539,273 + GFF3112 0.27 -1.3
539,273 + GFF3112 0.27 -0.4
539,514 - GFF3112 0.56 -0.1
539,514 - GFF3112 0.56 -0.3
539,591 + GFF3112 0.65 +0.5
539,592 - GFF3112 0.65 -0.4
539,657 + GFF3112 0.73 +1.8
539,658 - GFF3112 0.73 +0.1
539,658 - GFF3112 0.73 -0.0
539,658 - GFF3112 0.73 -0.3
539,687 + GFF3112 0.76 +0.9
539,687 + GFF3112 0.76 -1.0
539,687 + GFF3112 0.76 -1.5
539,687 + GFF3112 0.76 -0.2
539,688 - GFF3112 0.77 -1.1
539,688 - GFF3112 0.77 -1.3
539,688 - GFF3112 0.77 -0.5
539,898 - +1.2
539,898 - -0.4
539,898 - -0.2
539,898 - -1.7
539,901 + +1.2
539,901 + +0.1
539,901 + -0.0
539,901 + -0.5
539,902 - +0.6
539,902 - +0.1
539,902 - -2.7
539,902 - +0.2
539,972 + -1.8
539,972 + -0.0
539,973 - +0.5
539,973 - +0.7
540,027 + GFF3113 0.16 +0.6
540,027 + GFF3113 0.16 +0.2
540,028 - GFF3113 0.17 -0.3
540,028 - GFF3113 0.17 +0.2
540,030 + GFF3113 0.17 +1.2
540,031 - GFF3113 0.17 +0.3
540,093 + GFF3113 0.26 +0.8
540,093 + GFF3113 0.26 +0.1
540,094 - GFF3113 0.27 +0.1
540,264 + GFF3113 0.52 -0.2
540,264 + GFF3113 0.52 +2.5
540,265 - GFF3113 0.52 -0.4
540,265 - GFF3113 0.52 -0.3
540,265 - GFF3113 0.52 +0.0
540,580 + +0.4
540,580 + +0.3
540,581 - +0.5
540,581 - +0.6
541,000 + GFF3114 0.48 -0.2
541,000 + GFF3114 0.48 -0.8
541,521 + +0.5
541,522 - +1.0

Or see this region's nucleotide sequence