Strain Fitness in Variovorax sp. SCN45 around GFF3111

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3110 and GFF3111 are separated by 16 nucleotidesGFF3111 and GFF3112 are separated by 34 nucleotidesGFF3112 and GFF3113 are separated by 34 nucleotides GFF3110 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 537,296 to 538,645 GFF3110 GFF3111 - hypothetical protein, at 538,662 to 539,012 GFF3111 GFF3112 - Methionine ABC transporter substrate-binding protein, at 539,047 to 539,883 GFF3112 GFF3113 - Methionine ABC transporter permease protein, at 539,918 to 540,580 GFF3113 Position (kb) 538 539 540Strain fitness (log2 ratio) -2 -1 0 1 2 3at 537.753 kb on - strand, within GFF3110at 537.874 kb on - strand, within GFF3110at 538.046 kb on + strand, within GFF3110at 538.046 kb on + strand, within GFF3110at 538.046 kb on + strand, within GFF3110at 538.047 kb on - strand, within GFF3110at 538.196 kb on + strand, within GFF3110at 538.196 kb on + strand, within GFF3110at 538.197 kb on - strand, within GFF3110at 538.197 kb on - strand, within GFF3110at 538.349 kb on + strand, within GFF3110at 538.350 kb on - strand, within GFF3110at 538.568 kb on + strandat 538.568 kb on + strandat 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.850 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.897 kb on + strand, within GFF3111at 538.995 kb on + strandat 539.048 kb on + strandat 539.048 kb on + strandat 539.048 kb on + strandat 539.049 kb on - strandat 539.049 kb on - strandat 539.072 kb on + strandat 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.273 kb on + strand, within GFF3112at 539.273 kb on + strand, within GFF3112at 539.514 kb on - strand, within GFF3112at 539.514 kb on - strand, within GFF3112at 539.591 kb on + strand, within GFF3112at 539.592 kb on - strand, within GFF3112at 539.657 kb on + strand, within GFF3112at 539.658 kb on - strand, within GFF3112at 539.658 kb on - strand, within GFF3112at 539.658 kb on - strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.688 kb on - strand, within GFF3112at 539.688 kb on - strand, within GFF3112at 539.688 kb on - strand, within GFF3112at 539.898 kb on - strandat 539.898 kb on - strandat 539.898 kb on - strandat 539.898 kb on - strandat 539.901 kb on + strandat 539.901 kb on + strandat 539.901 kb on + strandat 539.901 kb on + strandat 539.902 kb on - strandat 539.902 kb on - strandat 539.902 kb on - strandat 539.902 kb on - strandat 539.972 kb on + strandat 539.972 kb on + strandat 539.973 kb on - strandat 539.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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537,753 - GFF3110 0.34 -0.6
537,874 - GFF3110 0.43 -0.3
538,046 + GFF3110 0.56 -0.3
538,046 + GFF3110 0.56 +0.7
538,046 + GFF3110 0.56 +1.5
538,047 - GFF3110 0.56 -0.9
538,196 + GFF3110 0.67 -0.4
538,196 + GFF3110 0.67 -0.5
538,197 - GFF3110 0.67 +0.7
538,197 - GFF3110 0.67 +0.2
538,349 + GFF3110 0.78 +0.9
538,350 - GFF3110 0.78 -0.5
538,568 + -0.7
538,568 + -1.2
538,838 - GFF3111 0.50 -1.0
538,838 - GFF3111 0.50 -0.1
538,838 - GFF3111 0.50 +0.5
538,838 - GFF3111 0.50 -1.7
538,838 - GFF3111 0.50 -0.2
538,838 - GFF3111 0.50 -1.0
538,850 + GFF3111 0.54 +0.2
538,858 + GFF3111 0.56 +0.8
538,858 + GFF3111 0.56 +0.6
538,858 + GFF3111 0.56 -0.7
538,858 + GFF3111 0.56 -0.3
538,858 + GFF3111 0.56 -0.4
538,858 + GFF3111 0.56 -0.8
538,858 + GFF3111 0.56 -0.5
538,858 + GFF3111 0.56 -0.8
538,858 + GFF3111 0.56 -1.2
538,858 + GFF3111 0.56 -0.8
538,859 - GFF3111 0.56 -0.5
538,859 - GFF3111 0.56 -1.0
538,859 - GFF3111 0.56 -0.2
538,859 - GFF3111 0.56 +0.8
538,859 - GFF3111 0.56 +0.5
538,859 - GFF3111 0.56 -0.7
538,897 + GFF3111 0.67 +0.6
538,995 + +0.4
539,048 + -0.8
539,048 + -0.1
539,048 + -0.7
539,049 - -0.3
539,049 - +1.2
539,072 + +1.0
539,189 + GFF3112 0.17 -0.5
539,189 + GFF3112 0.17 -0.4
539,189 + GFF3112 0.17 +1.3
539,189 + GFF3112 0.17 -0.3
539,189 + GFF3112 0.17 -0.2
539,190 - GFF3112 0.17 -0.2
539,190 - GFF3112 0.17 +0.8
539,190 - GFF3112 0.17 +2.8
539,190 - GFF3112 0.17 -0.3
539,190 - GFF3112 0.17 -0.4
539,190 - GFF3112 0.17 +0.6
539,192 + GFF3112 0.17 +0.1
539,192 + GFF3112 0.17 -0.7
539,192 + GFF3112 0.17 -0.7
539,193 - GFF3112 0.17 +0.0
539,193 - GFF3112 0.17 +0.6
539,193 - GFF3112 0.17 -1.2
539,193 - GFF3112 0.17 +3.7
539,193 - GFF3112 0.17 -1.2
539,273 + GFF3112 0.27 -1.3
539,273 + GFF3112 0.27 -0.4
539,514 - GFF3112 0.56 -0.1
539,514 - GFF3112 0.56 -0.3
539,591 + GFF3112 0.65 +0.5
539,592 - GFF3112 0.65 -0.4
539,657 + GFF3112 0.73 +1.8
539,658 - GFF3112 0.73 +0.1
539,658 - GFF3112 0.73 -0.0
539,658 - GFF3112 0.73 -0.3
539,687 + GFF3112 0.76 +0.9
539,687 + GFF3112 0.76 -1.0
539,687 + GFF3112 0.76 -1.5
539,687 + GFF3112 0.76 -0.2
539,688 - GFF3112 0.77 -1.1
539,688 - GFF3112 0.77 -1.3
539,688 - GFF3112 0.77 -0.5
539,898 - +1.2
539,898 - -0.4
539,898 - -0.2
539,898 - -1.7
539,901 + +1.2
539,901 + +0.1
539,901 + -0.0
539,901 + -0.5
539,902 - +0.6
539,902 - +0.1
539,902 - -2.7
539,902 - +0.2
539,972 + -1.8
539,972 + -0.0
539,973 - +0.5
539,973 - +0.7

Or see this region's nucleotide sequence