Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3105 and GFF3106 are separated by 34 nucleotides GFF3106 and GFF3107 are separated by 17 nucleotides GFF3107 and GFF3108 are separated by 26 nucleotides
GFF3105 - Tas protein, an NADP(H)-dependent aldo-keto reductase, at 532,185 to 533,363
GFF3105
GFF3106 - Hydrolase, alpha/beta fold family, at 533,398 to 534,291
GFF3106
GFF3107 - Oxidoreductase, aldo/keto reductase family, at 534,309 to 535,319
GFF3107
GFF3108 - Transcriptional regulator, LysR family, at 535,346 to 536,350
GFF3108
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 533.348 kb on + strand at 533.348 kb on + strand at 533.349 kb on - strand at 533.349 kb on - strand at 533.365 kb on + strand at 533.365 kb on + strand at 533.365 kb on + strand at 533.365 kb on + strand at 533.366 kb on - strand at 533.366 kb on - strand at 533.366 kb on - strand at 533.366 kb on - strand at 533.366 kb on - strand at 533.366 kb on - strand at 533.366 kb on - strand at 533.366 kb on - strand at 533.419 kb on + strand at 533.419 kb on + strand at 533.420 kb on - strand at 533.420 kb on - strand at 533.599 kb on + strand, within GFF3106 at 533.599 kb on + strand, within GFF3106 at 533.599 kb on + strand, within GFF3106 at 533.599 kb on + strand, within GFF3106 at 533.599 kb on + strand, within GFF3106 at 533.599 kb on + strand, within GFF3106 at 533.599 kb on + strand, within GFF3106 at 533.600 kb on - strand, within GFF3106 at 533.600 kb on - strand, within GFF3106 at 533.600 kb on - strand, within GFF3106 at 533.600 kb on - strand, within GFF3106 at 533.615 kb on - strand, within GFF3106 at 533.647 kb on + strand, within GFF3106 at 533.722 kb on + strand, within GFF3106 at 533.722 kb on + strand, within GFF3106 at 533.722 kb on + strand, within GFF3106 at 533.722 kb on + strand, within GFF3106 at 533.723 kb on - strand, within GFF3106 at 533.723 kb on - strand, within GFF3106 at 533.723 kb on - strand, within GFF3106 at 533.815 kb on + strand, within GFF3106 at 534.076 kb on + strand, within GFF3106 at 534.151 kb on + strand, within GFF3106 at 534.152 kb on - strand, within GFF3106 at 534.152 kb on - strand, within GFF3106 at 534.703 kb on + strand, within GFF3107 at 534.778 kb on + strand, within GFF3107 at 534.807 kb on + strand, within GFF3107 at 534.807 kb on + strand, within GFF3107 at 534.808 kb on - strand, within GFF3107 at 534.808 kb on - strand, within GFF3107 at 534.808 kb on - strand, within GFF3107 at 534.868 kb on + strand, within GFF3107 at 534.868 kb on + strand, within GFF3107 at 534.869 kb on - strand, within GFF3107 at 534.947 kb on - strand, within GFF3107 at 534.985 kb on + strand, within GFF3107 at 534.985 kb on + strand, within GFF3107 at 534.985 kb on + strand, within GFF3107 at 534.985 kb on + strand, within GFF3107 at 534.986 kb on - strand, within GFF3107 at 535.024 kb on + strand, within GFF3107 at 535.025 kb on - strand, within GFF3107 at 535.154 kb on - strand, within GFF3107 at 535.154 kb on - strand, within GFF3107 at 535.154 kb on - strand, within GFF3107 at 535.154 kb on - strand, within GFF3107 at 535.154 kb on - strand, within GFF3107 at 535.240 kb on + strand at 535.240 kb on + strand at 535.240 kb on + strand at 535.240 kb on + strand at 535.240 kb on + strand at 535.240 kb on + strand at 535.240 kb on + strand at 535.240 kb on + strand at 535.240 kb on + strand at 535.240 kb on + strand at 535.240 kb on + strand at 535.240 kb on + strand at 535.240 kb on + strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.241 kb on - strand at 535.887 kb on - strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.175 kb on - strand, within GFF3108 at 536.175 kb on - strand, within GFF3108 at 536.175 kb on - strand, within GFF3108 at 536.189 kb on + strand, within GFF3108 at 536.190 kb on - strand, within GFF3108 at 536.190 kb on - strand, within GFF3108 at 536.190 kb on - strand, within GFF3108 at 536.270 kb on + strand at 536.270 kb on + strand at 536.271 kb on - strand at 536.271 kb on - strand at 536.271 kb on - strand at 536.271 kb on - strand at 536.273 kb on + strand at 536.273 kb on + strand at 536.274 kb on - strand at 536.274 kb on - strand at 536.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 533,348 + -0.5 533,348 + -0.2 533,349 - -0.1 533,349 - +0.8 533,365 + +0.0 533,365 + -0.2 533,365 + +0.3 533,365 + +0.1 533,366 - +0.2 533,366 - -0.5 533,366 - -0.0 533,366 - -0.8 533,366 - -0.1 533,366 - +0.2 533,366 - +0.2 533,366 - -0.1 533,419 + -1.0 533,419 + -1.7 533,420 - +0.4 533,420 - -0.8 533,599 + GFF3106 0.22 +0.9 533,599 + GFF3106 0.22 -0.5 533,599 + GFF3106 0.22 +0.2 533,599 + GFF3106 0.22 -2.3 533,599 + GFF3106 0.22 -0.8 533,599 + GFF3106 0.22 -1.0 533,599 + GFF3106 0.22 +0.4 533,600 - GFF3106 0.23 -0.2 533,600 - GFF3106 0.23 +0.5 533,600 - GFF3106 0.23 -0.7 533,600 - GFF3106 0.23 +0.7 533,615 - GFF3106 0.24 +0.3 533,647 + GFF3106 0.28 -1.2 533,722 + GFF3106 0.36 -0.5 533,722 + GFF3106 0.36 +0.4 533,722 + GFF3106 0.36 +1.0 533,722 + GFF3106 0.36 +0.3 533,723 - GFF3106 0.36 -1.3 533,723 - GFF3106 0.36 +0.6 533,723 - GFF3106 0.36 -0.7 533,815 + GFF3106 0.47 -0.1 534,076 + GFF3106 0.76 -0.5 534,151 + GFF3106 0.84 -0.8 534,152 - GFF3106 0.84 +0.8 534,152 - GFF3106 0.84 -0.2 534,703 + GFF3107 0.39 -0.0 534,778 + GFF3107 0.46 -0.9 534,807 + GFF3107 0.49 -0.1 534,807 + GFF3107 0.49 +0.8 534,808 - GFF3107 0.49 -0.4 534,808 - GFF3107 0.49 -0.9 534,808 - GFF3107 0.49 -0.7 534,868 + GFF3107 0.55 -0.0 534,868 + GFF3107 0.55 -0.7 534,869 - GFF3107 0.55 -0.2 534,947 - GFF3107 0.63 +0.1 534,985 + GFF3107 0.67 -1.3 534,985 + GFF3107 0.67 -1.1 534,985 + GFF3107 0.67 +1.8 534,985 + GFF3107 0.67 -1.0 534,986 - GFF3107 0.67 -0.3 535,024 + GFF3107 0.71 -0.7 535,025 - GFF3107 0.71 -0.6 535,154 - GFF3107 0.84 -0.2 535,154 - GFF3107 0.84 +0.2 535,154 - GFF3107 0.84 +1.0 535,154 - GFF3107 0.84 +0.8 535,154 - GFF3107 0.84 +1.0 535,240 + -0.0 535,240 + -0.0 535,240 + -0.3 535,240 + -0.5 535,240 + -0.7 535,240 + -1.8 535,240 + -0.3 535,240 + +3.6 535,240 + -0.4 535,240 + -2.3 535,240 + -0.1 535,240 + +0.8 535,240 + -0.8 535,241 - +0.2 535,241 - -0.2 535,241 - -1.2 535,241 - -0.1 535,241 - +0.5 535,241 - -0.3 535,241 - -0.6 535,241 - -0.2 535,241 - -0.1 535,241 - -1.2 535,241 - -0.6 535,241 - +1.1 535,241 - -1.7 535,241 - -0.5 535,887 - GFF3108 0.54 +0.0 535,970 + GFF3108 0.62 -0.7 535,970 + GFF3108 0.62 +0.6 535,970 + GFF3108 0.62 -0.0 535,970 + GFF3108 0.62 +0.6 535,970 + GFF3108 0.62 -1.1 535,970 + GFF3108 0.62 +0.1 536,174 + GFF3108 0.82 +0.4 536,174 + GFF3108 0.82 -1.6 536,174 + GFF3108 0.82 -0.4 536,174 + GFF3108 0.82 -0.3 536,174 + GFF3108 0.82 -0.4 536,174 + GFF3108 0.82 +1.0 536,174 + GFF3108 0.82 -0.5 536,174 + GFF3108 0.82 -0.3 536,175 - GFF3108 0.82 +0.2 536,175 - GFF3108 0.82 -0.5 536,175 - GFF3108 0.82 +0.5 536,189 + GFF3108 0.84 -0.5 536,190 - GFF3108 0.84 +0.9 536,190 - GFF3108 0.84 +0.6 536,190 - GFF3108 0.84 +0.0 536,270 + +1.8 536,270 + +0.6 536,271 - -1.0 536,271 - -1.7 536,271 - -0.8 536,271 - +0.8 536,273 + -0.8 536,273 + -0.5 536,274 - +0.0 536,274 - +0.3 536,274 - -1.0
Or see this region's nucleotide sequence