Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3088 and GFF3089 are separated by 11 nucleotides GFF3089 and GFF3090 are separated by 12 nucleotides GFF3090 and GFF3091 are separated by 18 nucleotides
GFF3088 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 518,275 to 519,498
GFF3088
GFF3089 - Amidophosphoribosyltransferase (EC 2.4.2.14), at 519,510 to 521,012
GFF3089
GFF3090 - Colicin V production protein, at 521,025 to 521,510
GFF3090
GFF3091 - Septum-associated cell division protein DedD, at 521,529 to 522,410
GFF3091
Position (kb) 519
520
521
522 Strain fitness (log2 ratio) -2
-1
0
1
2 at 519.511 kb on + strand at 519.511 kb on + strand at 519.511 kb on + strand at 519.512 kb on - strand at 519.512 kb on - strand at 519.625 kb on + strand at 519.625 kb on + strand at 519.626 kb on - strand at 519.626 kb on - strand at 519.626 kb on - strand at 519.713 kb on - strand, within GFF3089 at 519.805 kb on + strand, within GFF3089 at 519.848 kb on - strand, within GFF3089 at 519.848 kb on - strand, within GFF3089 at 520.034 kb on - strand, within GFF3089 at 520.247 kb on - strand, within GFF3089 at 521.035 kb on + strand at 521.036 kb on - strand at 521.036 kb on - strand at 521.036 kb on - strand at 521.036 kb on - strand at 521.036 kb on - strand at 521.213 kb on + strand, within GFF3090 at 521.213 kb on + strand, within GFF3090 at 521.213 kb on + strand, within GFF3090 at 521.214 kb on - strand, within GFF3090 at 521.214 kb on - strand, within GFF3090 at 521.422 kb on + strand, within GFF3090 at 521.424 kb on + strand, within GFF3090 at 521.425 kb on - strand, within GFF3090 at 521.425 kb on - strand, within GFF3090 at 521.425 kb on - strand, within GFF3090 at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 519,511 + +0.2 519,511 + +0.2 519,511 + -0.5 519,512 - -0.8 519,512 - -0.1 519,625 + -0.2 519,625 + -0.1 519,626 - +0.2 519,626 - +0.2 519,626 - +0.8 519,713 - GFF3089 0.14 -1.7 519,805 + GFF3089 0.20 +0.6 519,848 - GFF3089 0.22 +1.8 519,848 - GFF3089 0.22 -0.2 520,034 - GFF3089 0.35 -0.7 520,247 - GFF3089 0.49 +0.8 521,035 + -0.3 521,036 - +0.3 521,036 - +1.0 521,036 - -0.8 521,036 - -0.5 521,036 - -0.7 521,213 + GFF3090 0.39 -1.2 521,213 + GFF3090 0.39 -1.4 521,213 + GFF3090 0.39 -0.8 521,214 - GFF3090 0.39 +0.1 521,214 - GFF3090 0.39 -0.9 521,422 + GFF3090 0.82 -1.0 521,424 + GFF3090 0.82 -2.2 521,425 - GFF3090 0.82 +2.0 521,425 - GFF3090 0.82 -1.1 521,425 - GFF3090 0.82 -1.0 521,530 + -0.4 521,530 + -2.3 521,530 + +0.0 521,530 + -0.3 521,530 + -0.8 521,530 + -1.8 521,530 + +0.5 521,530 + -0.4 521,530 + -0.7 521,531 - -0.5 521,531 - -0.5 521,531 - +0.8 521,531 - -1.4 521,531 - -0.7 521,531 - +0.2 521,531 - -0.4 521,531 - +0.6 521,531 - +0.8 521,531 - -0.7 521,531 - -0.3 521,665 + GFF3091 0.15 -0.7 521,665 + GFF3091 0.15 -1.3 521,665 + GFF3091 0.15 -1.2 521,665 + GFF3091 0.15 -0.0 521,665 + GFF3091 0.15 +0.3 521,665 + GFF3091 0.15 -1.0 521,665 + GFF3091 0.15 -0.7 521,665 + GFF3091 0.15 -1.0 521,666 - GFF3091 0.16 -1.2 521,666 - GFF3091 0.16 -0.2 521,666 - GFF3091 0.16 +0.9 521,666 - GFF3091 0.16 -1.3 521,666 - GFF3091 0.16 -0.4 521,666 - GFF3091 0.16 -2.6 521,666 - GFF3091 0.16 +0.2 521,666 - GFF3091 0.16 +0.5 521,666 - GFF3091 0.16 +1.0 521,666 - GFF3091 0.16 +0.0 521,666 - GFF3091 0.16 +0.4
Or see this region's nucleotide sequence