Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3042 and GFF3043 are separated by 4 nucleotides GFF3043 and GFF3044 are separated by 69 nucleotides GFF3044 and GFF3045 are separated by 884 nucleotides
GFF3042 - hypothetical protein, at 476,143 to 476,913
GFF3042
GFF3043 - Response regulator BaeR, at 476,918 to 477,607
GFF3043
GFF3044 - LPS-assembly protein LptD @ Organic solvent tolerance protein precursor, at 477,677 to 480,034
GFF3044
GFF3045 - Glutamine ABC transporter, substrate-binding protein GlnH, at 480,919 to 481,761
GFF3045
Position (kb) 477
478
479
480
481 Strain fitness (log2 ratio) -2
-1
0
1 at 476.698 kb on + strand, within GFF3042 at 476.699 kb on - strand, within GFF3042 at 476.699 kb on - strand, within GFF3042 at 476.744 kb on - strand, within GFF3042 at 477.210 kb on - strand, within GFF3043 at 477.210 kb on - strand, within GFF3043 at 477.210 kb on - strand, within GFF3043 at 478.152 kb on - strand, within GFF3044 at 478.152 kb on - strand, within GFF3044 at 478.152 kb on - strand, within GFF3044 at 478.152 kb on - strand, within GFF3044 at 478.386 kb on - strand, within GFF3044 at 478.397 kb on + strand, within GFF3044 at 478.398 kb on - strand, within GFF3044 at 478.401 kb on - strand, within GFF3044 at 478.401 kb on - strand, within GFF3044 at 478.502 kb on + strand, within GFF3044 at 478.503 kb on - strand, within GFF3044 at 478.664 kb on + strand, within GFF3044 at 478.790 kb on + strand, within GFF3044 at 478.818 kb on - strand, within GFF3044 at 478.847 kb on + strand, within GFF3044 at 478.848 kb on - strand, within GFF3044 at 478.896 kb on - strand, within GFF3044 at 478.896 kb on - strand, within GFF3044 at 478.923 kb on - strand, within GFF3044 at 479.041 kb on + strand, within GFF3044 at 479.051 kb on + strand, within GFF3044 at 479.280 kb on - strand, within GFF3044 at 479.582 kb on + strand, within GFF3044 at 479.583 kb on - strand, within GFF3044 at 479.598 kb on - strand, within GFF3044 at 479.775 kb on - strand, within GFF3044 at 479.823 kb on - strand at 479.998 kb on + strand at 479.999 kb on - strand at 479.999 kb on - strand at 479.999 kb on - strand at 480.020 kb on - strand at 480.303 kb on - strand at 480.303 kb on - strand at 480.399 kb on - strand at 480.401 kb on + strand at 480.401 kb on + strand at 480.401 kb on + strand at 480.401 kb on + strand at 480.401 kb on + strand at 480.417 kb on + strand at 480.686 kb on + strand at 480.687 kb on - strand at 480.717 kb on + strand at 480.918 kb on - strand at 480.983 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 476,698 + GFF3042 0.72 -0.3 476,699 - GFF3042 0.72 +0.2 476,699 - GFF3042 0.72 -0.1 476,744 - GFF3042 0.78 +0.6 477,210 - GFF3043 0.42 +0.4 477,210 - GFF3043 0.42 +0.8 477,210 - GFF3043 0.42 -1.0 478,152 - GFF3044 0.20 +0.1 478,152 - GFF3044 0.20 +0.5 478,152 - GFF3044 0.20 -0.0 478,152 - GFF3044 0.20 -0.0 478,386 - GFF3044 0.30 +0.3 478,397 + GFF3044 0.31 -0.3 478,398 - GFF3044 0.31 -0.1 478,401 - GFF3044 0.31 -0.9 478,401 - GFF3044 0.31 +0.0 478,502 + GFF3044 0.35 -0.9 478,503 - GFF3044 0.35 +0.1 478,664 + GFF3044 0.42 +0.0 478,790 + GFF3044 0.47 +0.5 478,818 - GFF3044 0.48 +0.6 478,847 + GFF3044 0.50 +0.1 478,848 - GFF3044 0.50 +0.5 478,896 - GFF3044 0.52 -0.8 478,896 - GFF3044 0.52 +0.2 478,923 - GFF3044 0.53 +0.4 479,041 + GFF3044 0.58 -0.5 479,051 + GFF3044 0.58 -0.2 479,280 - GFF3044 0.68 -1.9 479,582 + GFF3044 0.81 -0.2 479,583 - GFF3044 0.81 -0.4 479,598 - GFF3044 0.81 -0.4 479,775 - GFF3044 0.89 +0.3 479,823 - +0.2 479,998 + +0.0 479,999 - -0.8 479,999 - -0.6 479,999 - -0.0 480,020 - -0.0 480,303 - +0.2 480,303 - -0.5 480,399 - -0.2 480,401 + -0.4 480,401 + -0.7 480,401 + +0.2 480,401 + -0.3 480,401 + -1.0 480,417 + -1.5 480,686 + -1.0 480,687 - -0.0 480,717 + +0.6 480,918 - -0.1 480,983 + -0.3
Or see this region's nucleotide sequence