Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3041 and GFF3042 are separated by 265 nucleotides GFF3042 and GFF3043 are separated by 4 nucleotides GFF3043 and GFF3044 are separated by 69 nucleotides
GFF3041 - Outer membrane porin protein 32 precursor, at 474,720 to 475,877
GFF3041
GFF3042 - hypothetical protein, at 476,143 to 476,913
GFF3042
GFF3043 - Response regulator BaeR, at 476,918 to 477,607
GFF3043
GFF3044 - LPS-assembly protein LptD @ Organic solvent tolerance protein precursor, at 477,677 to 480,034
GFF3044
Position (kb) 476
477 Strain fitness (log2 ratio) -1
0
1 at 475.406 kb on - strand, within GFF3041 at 475.406 kb on - strand, within GFF3041 at 475.406 kb on - strand, within GFF3041 at 475.929 kb on + strand at 475.930 kb on - strand at 475.930 kb on - strand at 475.964 kb on + strand at 476.140 kb on + strand at 476.140 kb on + strand at 476.141 kb on - strand at 476.141 kb on - strand at 476.141 kb on - strand at 476.141 kb on - strand at 476.141 kb on - strand at 476.161 kb on - strand at 476.365 kb on + strand, within GFF3042 at 476.365 kb on + strand, within GFF3042 at 476.366 kb on - strand, within GFF3042 at 476.428 kb on + strand, within GFF3042 at 476.429 kb on - strand, within GFF3042 at 476.617 kb on + strand, within GFF3042 at 476.617 kb on + strand, within GFF3042 at 476.698 kb on + strand, within GFF3042 at 476.699 kb on - strand, within GFF3042 at 476.699 kb on - strand, within GFF3042 at 476.744 kb on - strand, within GFF3042 at 477.210 kb on - strand, within GFF3043 at 477.210 kb on - strand, within GFF3043 at 477.210 kb on - strand, within GFF3043
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 475,406 - GFF3041 0.59 -0.2 475,406 - GFF3041 0.59 -0.0 475,406 - GFF3041 0.59 -0.2 475,929 + +0.5 475,930 - -0.6 475,930 - -0.2 475,964 + +0.2 476,140 + +0.0 476,140 + -0.9 476,141 - +0.0 476,141 - +0.6 476,141 - -0.4 476,141 - +0.8 476,141 - +0.5 476,161 - +0.2 476,365 + GFF3042 0.29 +0.1 476,365 + GFF3042 0.29 -1.2 476,366 - GFF3042 0.29 +0.4 476,428 + GFF3042 0.37 -0.0 476,429 - GFF3042 0.37 +0.6 476,617 + GFF3042 0.61 -0.3 476,617 + GFF3042 0.61 -0.1 476,698 + GFF3042 0.72 -0.3 476,699 - GFF3042 0.72 +0.2 476,699 - GFF3042 0.72 -0.1 476,744 - GFF3042 0.78 +0.6 477,210 - GFF3043 0.42 +0.4 477,210 - GFF3043 0.42 +0.8 477,210 - GFF3043 0.42 -1.0
Or see this region's nucleotide sequence