Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3025 and GFF3026 overlap by 4 nucleotides GFF3026 and GFF3027 are separated by 20 nucleotides GFF3027 and GFF3028 are separated by 5 nucleotides GFF3028 and GFF3029 are separated by 58 nucleotides
GFF3025 - Proton/sodium-glutamate symport protein, at 453,233 to 454,702
GFF3025
GFF3026 - KEGG: type VI secretion system protein, at 454,699 to 455,172
GFF3026
GFF3027 - T6SS component TssK (ImpJ/VasE), at 455,193 to 456,515
GFF3027
GFF3028 - T6SS outer membrane component TssL (ImpK/VasF), at 456,521 to 457,282
GFF3028
GFF3029 - T6SS component TssM (IcmF/VasK), at 457,341 to 461,426
GFF3029
Position (kb) 455
456
457 Strain fitness (log2 ratio) -1
0
1
2 at 454.196 kb on + strand, within GFF3025 at 454.196 kb on + strand, within GFF3025 at 454.197 kb on - strand, within GFF3025 at 454.197 kb on - strand, within GFF3025 at 454.199 kb on + strand, within GFF3025 at 454.200 kb on - strand, within GFF3025 at 454.232 kb on + strand, within GFF3025 at 454.233 kb on - strand, within GFF3025 at 454.662 kb on - strand at 454.976 kb on - strand, within GFF3026 at 455.071 kb on + strand, within GFF3026 at 455.071 kb on + strand, within GFF3026 at 455.071 kb on + strand, within GFF3026 at 455.072 kb on - strand, within GFF3026 at 455.072 kb on - strand, within GFF3026 at 455.518 kb on - strand, within GFF3027 at 455.518 kb on - strand, within GFF3027 at 455.988 kb on + strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 456.064 kb on - strand, within GFF3027 at 456.064 kb on - strand, within GFF3027 at 456.088 kb on + strand, within GFF3027 at 456.089 kb on - strand, within GFF3027 at 456.089 kb on - strand, within GFF3027 at 456.144 kb on + strand, within GFF3027 at 456.394 kb on - strand at 456.584 kb on + strand at 456.755 kb on + strand, within GFF3028 at 456.755 kb on + strand, within GFF3028 at 456.756 kb on - strand, within GFF3028 at 456.941 kb on + strand, within GFF3028 at 457.094 kb on + strand, within GFF3028 at 457.094 kb on + strand, within GFF3028 at 457.419 kb on + strand at 457.420 kb on - strand at 457.420 kb on - strand at 457.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 454,196 + GFF3025 0.66 +0.8 454,196 + GFF3025 0.66 -1.0 454,197 - GFF3025 0.66 -0.6 454,197 - GFF3025 0.66 +1.8 454,199 + GFF3025 0.66 +0.0 454,200 - GFF3025 0.66 +0.3 454,232 + GFF3025 0.68 -0.3 454,233 - GFF3025 0.68 -0.2 454,662 - -0.1 454,976 - GFF3026 0.58 -0.5 455,071 + GFF3026 0.78 -1.2 455,071 + GFF3026 0.78 +0.6 455,071 + GFF3026 0.78 -0.9 455,072 - GFF3026 0.79 -0.2 455,072 - GFF3026 0.79 +0.0 455,518 - GFF3027 0.25 -1.2 455,518 - GFF3027 0.25 -0.4 455,988 + GFF3027 0.60 -0.9 455,989 - GFF3027 0.60 +0.5 455,989 - GFF3027 0.60 +0.4 455,989 - GFF3027 0.60 +0.2 456,064 - GFF3027 0.66 +0.1 456,064 - GFF3027 0.66 +0.4 456,088 + GFF3027 0.68 -0.3 456,089 - GFF3027 0.68 -0.1 456,089 - GFF3027 0.68 +1.2 456,144 + GFF3027 0.72 +0.2 456,394 - -0.0 456,584 + -0.6 456,755 + GFF3028 0.31 -0.3 456,755 + GFF3028 0.31 +0.3 456,756 - GFF3028 0.31 +1.0 456,941 + GFF3028 0.55 -1.4 457,094 + GFF3028 0.75 +0.3 457,094 + GFF3028 0.75 -0.7 457,419 + +0.5 457,420 - +0.6 457,420 - -0.2 457,420 - +0.5
Or see this region's nucleotide sequence