Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3018 and GFF3019 are separated by 53 nucleotides GFF3019 and GFF3020 are separated by 3 nucleotides GFF3020 and GFF3021 are separated by 63 nucleotides GFF3021 and GFF3022 overlap by 4 nucleotides
GFF3018 - VgrG protein, at 446,843 to 448,783
GFF3018
GFF3019 - hypothetical protein, at 448,837 to 449,511
GFF3019
GFF3020 - FIG00966904: hypothetical protein, at 449,515 to 449,904
GFF3020
GFF3021 - no description, at 449,968 to 450,150
GFF3021
GFF3022 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 450,147 to 451,199
GFF3022
Position (kb) 448
449
450 Strain fitness (log2 ratio) -2
-1
0
1 at 448.109 kb on + strand, within GFF3018 at 448.109 kb on + strand, within GFF3018 at 448.109 kb on + strand, within GFF3018 at 448.109 kb on + strand, within GFF3018 at 448.109 kb on + strand, within GFF3018 at 448.110 kb on - strand, within GFF3018 at 448.110 kb on - strand, within GFF3018 at 448.110 kb on - strand, within GFF3018 at 448.110 kb on - strand, within GFF3018 at 448.154 kb on + strand, within GFF3018 at 448.289 kb on + strand, within GFF3018 at 448.289 kb on + strand, within GFF3018 at 448.289 kb on + strand, within GFF3018 at 448.289 kb on + strand, within GFF3018 at 448.290 kb on - strand, within GFF3018 at 448.290 kb on - strand, within GFF3018 at 448.511 kb on + strand, within GFF3018 at 448.511 kb on + strand, within GFF3018 at 448.512 kb on - strand, within GFF3018 at 448.960 kb on + strand, within GFF3019 at 449.069 kb on - strand, within GFF3019 at 449.072 kb on - strand, within GFF3019 at 449.176 kb on + strand, within GFF3019 at 449.176 kb on + strand, within GFF3019 at 449.209 kb on + strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.282 kb on - strand, within GFF3019 at 449.317 kb on + strand, within GFF3019 at 449.317 kb on + strand, within GFF3019 at 449.317 kb on + strand, within GFF3019 at 449.318 kb on - strand, within GFF3019 at 449.944 kb on + strand at 449.944 kb on + strand at 449.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 448,109 + GFF3018 0.65 +0.0 448,109 + GFF3018 0.65 -0.4 448,109 + GFF3018 0.65 +0.4 448,109 + GFF3018 0.65 +0.2 448,109 + GFF3018 0.65 +1.4 448,110 - GFF3018 0.65 -2.0 448,110 - GFF3018 0.65 -1.2 448,110 - GFF3018 0.65 -1.1 448,110 - GFF3018 0.65 +0.6 448,154 + GFF3018 0.68 +0.0 448,289 + GFF3018 0.74 +1.1 448,289 + GFF3018 0.74 +0.4 448,289 + GFF3018 0.74 -0.8 448,289 + GFF3018 0.74 +0.3 448,290 - GFF3018 0.75 +0.6 448,290 - GFF3018 0.75 +0.2 448,511 + GFF3018 0.86 +1.7 448,511 + GFF3018 0.86 -0.3 448,512 - GFF3018 0.86 +0.6 448,960 + GFF3019 0.18 -0.1 449,069 - GFF3019 0.34 -1.9 449,072 - GFF3019 0.35 +0.1 449,176 + GFF3019 0.50 +0.3 449,176 + GFF3019 0.50 -0.2 449,209 + GFF3019 0.55 -0.5 449,210 - GFF3019 0.55 +0.1 449,210 - GFF3019 0.55 +0.1 449,210 - GFF3019 0.55 -0.2 449,210 - GFF3019 0.55 -0.2 449,210 - GFF3019 0.55 +0.5 449,282 - GFF3019 0.66 +0.8 449,317 + GFF3019 0.71 +1.3 449,317 + GFF3019 0.71 -2.3 449,317 + GFF3019 0.71 +0.5 449,318 - GFF3019 0.71 +0.9 449,944 + -1.2 449,944 + -0.0 449,945 - +0.1
Or see this region's nucleotide sequence