Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2994 and GFF2995 are separated by 6 nucleotides GFF2995 and GFF2996 are separated by 14 nucleotides GFF2996 and GFF2997 are separated by 113 nucleotides GFF2997 and GFF2998 are separated by 2 nucleotides
GFF2994 - Transcriptional regulator, LysR family, at 425,660 to 426,610
GFF2994
GFF2995 - hypothetical protein, at 426,617 to 427,279
GFF2995
GFF2996 - Thiol-disulfide isomerase and thioredoxins, at 427,294 to 427,677
GFF2996
GFF2997 - FIG027190: Putative transmembrane protein, at 427,791 to 428,129
GFF2997
GFF2998 - Virulence factor BrkB, at 428,132 to 429,343
GFF2998
Position (kb) 426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 425.625 kb on + strand at 425.626 kb on - strand at 425.626 kb on - strand at 425.626 kb on - strand at 425.626 kb on - strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.748 kb on - strand at 426.110 kb on + strand, within GFF2994 at 426.110 kb on + strand, within GFF2994 at 426.110 kb on + strand, within GFF2994 at 426.110 kb on + strand, within GFF2994 at 426.110 kb on + strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.141 kb on + strand, within GFF2994 at 426.142 kb on - strand, within GFF2994 at 426.167 kb on + strand, within GFF2994 at 426.167 kb on + strand, within GFF2994 at 426.167 kb on + strand, within GFF2994 at 426.168 kb on - strand, within GFF2994 at 426.168 kb on - strand, within GFF2994 at 426.168 kb on - strand, within GFF2994 at 426.315 kb on - strand, within GFF2994 at 426.784 kb on - strand, within GFF2995 at 426.784 kb on - strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 427.014 kb on + strand, within GFF2995 at 427.014 kb on + strand, within GFF2995 at 427.014 kb on + strand, within GFF2995 at 427.014 kb on + strand, within GFF2995 at 427.014 kb on + strand, within GFF2995 at 427.015 kb on - strand, within GFF2995 at 427.015 kb on - strand, within GFF2995 at 427.015 kb on - strand, within GFF2995 at 427.029 kb on + strand, within GFF2995 at 427.029 kb on + strand, within GFF2995 at 427.030 kb on - strand, within GFF2995 at 427.030 kb on - strand, within GFF2995 at 427.030 kb on - strand, within GFF2995 at 427.116 kb on + strand, within GFF2995 at 427.116 kb on + strand, within GFF2995 at 427.117 kb on - strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.184 kb on + strand, within GFF2995 at 427.184 kb on + strand, within GFF2995 at 427.184 kb on + strand, within GFF2995 at 427.185 kb on - strand, within GFF2995 at 427.736 kb on + strand at 427.736 kb on + strand at 427.736 kb on + strand at 427.736 kb on + strand at 427.736 kb on + strand at 427.737 kb on - strand at 427.857 kb on + strand, within GFF2997 at 427.857 kb on + strand, within GFF2997 at 427.857 kb on + strand, within GFF2997 at 427.857 kb on + strand, within GFF2997 at 427.858 kb on - strand, within GFF2997 at 427.858 kb on - strand, within GFF2997 at 427.866 kb on + strand, within GFF2997 at 427.866 kb on + strand, within GFF2997 at 427.867 kb on - strand, within GFF2997 at 428.067 kb on + strand, within GFF2997 at 428.068 kb on - strand, within GFF2997 at 428.068 kb on - strand, within GFF2997 at 428.068 kb on - strand, within GFF2997 at 428.094 kb on + strand, within GFF2997 at 428.094 kb on + strand, within GFF2997 at 428.094 kb on + strand, within GFF2997 at 428.127 kb on + strand at 428.127 kb on + strand at 428.127 kb on + strand at 428.127 kb on + strand at 428.127 kb on + strand at 428.128 kb on - strand at 428.128 kb on - strand at 428.128 kb on - strand at 428.128 kb on - strand at 428.134 kb on - strand at 428.134 kb on - strand at 428.134 kb on - strand at 428.271 kb on + strand, within GFF2998 at 428.271 kb on + strand, within GFF2998 at 428.271 kb on + strand, within GFF2998 at 428.271 kb on + strand, within GFF2998 at 428.272 kb on - strand, within GFF2998 at 428.272 kb on - strand, within GFF2998
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 425,625 + +1.3 425,626 - -0.8 425,626 - -0.5 425,626 - -0.5 425,626 - +0.8 425,747 + -0.7 425,747 + +0.8 425,747 + -0.3 425,747 + -0.5 425,747 + +0.1 425,747 + -1.0 425,747 + -0.6 425,747 + -0.6 425,747 + -0.2 425,747 + +0.3 425,748 - -0.4 426,110 + GFF2994 0.47 -2.3 426,110 + GFF2994 0.47 -0.2 426,110 + GFF2994 0.47 +0.1 426,110 + GFF2994 0.47 +0.8 426,110 + GFF2994 0.47 +0.3 426,111 - GFF2994 0.47 -1.0 426,111 - GFF2994 0.47 +0.2 426,111 - GFF2994 0.47 +0.8 426,111 - GFF2994 0.47 +0.2 426,111 - GFF2994 0.47 +0.2 426,111 - GFF2994 0.47 +0.6 426,141 + GFF2994 0.51 -0.3 426,142 - GFF2994 0.51 -1.0 426,167 + GFF2994 0.53 +0.8 426,167 + GFF2994 0.53 -0.5 426,167 + GFF2994 0.53 -0.2 426,168 - GFF2994 0.53 +0.7 426,168 - GFF2994 0.53 -0.9 426,168 - GFF2994 0.53 -0.0 426,315 - GFF2994 0.69 -0.3 426,784 - GFF2995 0.25 -1.1 426,784 - GFF2995 0.25 -0.2 426,843 + GFF2995 0.34 -0.3 426,843 + GFF2995 0.34 -0.1 426,843 + GFF2995 0.34 +0.5 426,843 + GFF2995 0.34 -0.2 426,843 + GFF2995 0.34 +2.8 426,843 + GFF2995 0.34 -0.4 426,843 + GFF2995 0.34 -2.0 426,843 + GFF2995 0.34 +0.1 426,843 + GFF2995 0.34 +0.6 426,843 + GFF2995 0.34 -0.2 426,844 - GFF2995 0.34 +0.0 426,844 - GFF2995 0.34 -0.1 426,844 - GFF2995 0.34 -1.4 426,844 - GFF2995 0.34 +0.3 426,844 - GFF2995 0.34 -0.3 426,844 - GFF2995 0.34 +0.4 426,844 - GFF2995 0.34 +0.2 426,844 - GFF2995 0.34 -0.2 426,844 - GFF2995 0.34 -0.3 426,951 + GFF2995 0.50 +0.8 426,951 + GFF2995 0.50 -0.1 426,951 + GFF2995 0.50 +1.8 426,951 + GFF2995 0.50 -0.9 426,951 + GFF2995 0.50 -0.9 426,951 + GFF2995 0.50 +0.1 426,951 + GFF2995 0.50 +0.2 426,951 + GFF2995 0.50 +0.0 426,952 - GFF2995 0.51 +0.2 426,952 - GFF2995 0.51 +1.8 426,952 - GFF2995 0.51 +0.9 426,952 - GFF2995 0.51 +0.6 426,952 - GFF2995 0.51 -0.1 426,952 - GFF2995 0.51 +1.8 426,952 - GFF2995 0.51 +1.8 426,952 - GFF2995 0.51 -0.2 427,014 + GFF2995 0.60 -1.5 427,014 + GFF2995 0.60 +0.5 427,014 + GFF2995 0.60 +1.6 427,014 + GFF2995 0.60 -0.2 427,014 + GFF2995 0.60 -1.1 427,015 - GFF2995 0.60 -0.1 427,015 - GFF2995 0.60 -0.8 427,015 - GFF2995 0.60 -0.3 427,029 + GFF2995 0.62 -0.4 427,029 + GFF2995 0.62 -0.2 427,030 - GFF2995 0.62 +1.1 427,030 - GFF2995 0.62 -0.6 427,030 - GFF2995 0.62 -0.2 427,116 + GFF2995 0.75 -1.9 427,116 + GFF2995 0.75 +0.2 427,117 - GFF2995 0.75 -0.1 427,122 + GFF2995 0.76 -0.5 427,122 + GFF2995 0.76 -0.3 427,122 + GFF2995 0.76 -0.0 427,122 + GFF2995 0.76 -1.5 427,122 + GFF2995 0.76 -1.0 427,122 + GFF2995 0.76 -0.1 427,122 + GFF2995 0.76 -3.0 427,122 + GFF2995 0.76 -0.5 427,122 + GFF2995 0.76 -0.5 427,122 + GFF2995 0.76 +0.2 427,122 + GFF2995 0.76 +0.2 427,122 + GFF2995 0.76 -0.1 427,122 + GFF2995 0.76 +0.1 427,122 + GFF2995 0.76 +0.1 427,122 + GFF2995 0.76 -1.2 427,122 + GFF2995 0.76 +0.2 427,122 + GFF2995 0.76 +0.1 427,122 + GFF2995 0.76 +1.8 427,122 + GFF2995 0.76 +0.5 427,122 + GFF2995 0.76 +0.3 427,123 - GFF2995 0.76 +0.2 427,123 - GFF2995 0.76 +0.6 427,123 - GFF2995 0.76 -0.9 427,123 - GFF2995 0.76 +0.2 427,123 - GFF2995 0.76 -0.6 427,123 - GFF2995 0.76 +0.2 427,123 - GFF2995 0.76 -0.0 427,123 - GFF2995 0.76 +0.4 427,123 - GFF2995 0.76 -0.3 427,123 - GFF2995 0.76 +0.3 427,123 - GFF2995 0.76 -0.5 427,123 - GFF2995 0.76 +0.9 427,123 - GFF2995 0.76 +0.2 427,123 - GFF2995 0.76 -0.3 427,123 - GFF2995 0.76 -0.5 427,123 - GFF2995 0.76 -0.5 427,123 - GFF2995 0.76 +0.4 427,184 + GFF2995 0.86 -1.4 427,184 + GFF2995 0.86 +0.5 427,184 + GFF2995 0.86 -0.6 427,185 - GFF2995 0.86 -0.8 427,736 + +0.4 427,736 + +0.2 427,736 + +0.3 427,736 + -0.6 427,736 + -1.1 427,737 - -0.5 427,857 + GFF2997 0.19 -1.5 427,857 + GFF2997 0.19 -2.3 427,857 + GFF2997 0.19 -0.3 427,857 + GFF2997 0.19 -0.4 427,858 - GFF2997 0.20 -1.5 427,858 - GFF2997 0.20 +0.8 427,866 + GFF2997 0.22 -0.0 427,866 + GFF2997 0.22 -0.3 427,867 - GFF2997 0.22 +0.6 428,067 + GFF2997 0.81 -1.1 428,068 - GFF2997 0.82 -0.1 428,068 - GFF2997 0.82 +0.0 428,068 - GFF2997 0.82 -1.1 428,094 + GFF2997 0.89 -0.1 428,094 + GFF2997 0.89 -0.3 428,094 + GFF2997 0.89 -0.5 428,127 + -1.1 428,127 + -0.4 428,127 + -0.5 428,127 + -1.2 428,127 + -0.7 428,128 - +0.4 428,128 - +0.5 428,128 - +0.0 428,128 - -0.8 428,134 - -0.3 428,134 - -0.6 428,134 - +0.2 428,271 + GFF2998 0.11 -0.0 428,271 + GFF2998 0.11 +0.2 428,271 + GFF2998 0.11 -0.9 428,271 + GFF2998 0.11 +0.6 428,272 - GFF2998 0.12 -1.3 428,272 - GFF2998 0.12 -0.2
Or see this region's nucleotide sequence