Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2991 and GFF2992 are separated by 211 nucleotides GFF2992 and GFF2993 are separated by 8 nucleotides
GFF2991 - BUG/TctC family periplasmic protein, at 421,945 to 422,904
GFF2991
GFF2992 - BUG/TctC family periplasmic protein, at 423,116 to 424,105
GFF2992
GFF2993 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 424,114 to 425,544
GFF2993
Position (kb) 423
424
425 Strain fitness (log2 ratio) -2
-1
0
1
2 at 422.591 kb on + strand, within GFF2991 at 422.591 kb on + strand, within GFF2991 at 422.684 kb on + strand, within GFF2991 at 422.684 kb on + strand, within GFF2991 at 422.684 kb on + strand, within GFF2991 at 422.684 kb on + strand, within GFF2991 at 422.684 kb on + strand, within GFF2991 at 422.685 kb on - strand, within GFF2991 at 422.685 kb on - strand, within GFF2991 at 422.685 kb on - strand, within GFF2991 at 423.072 kb on + strand at 423.072 kb on + strand at 423.072 kb on + strand at 423.073 kb on - strand at 423.073 kb on - strand at 423.117 kb on + strand at 423.117 kb on + strand at 423.117 kb on + strand at 423.128 kb on - strand at 423.333 kb on + strand, within GFF2992 at 423.334 kb on - strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.538 kb on - strand, within GFF2992 at 423.538 kb on - strand, within GFF2992 at 423.538 kb on - strand, within GFF2992 at 423.538 kb on - strand, within GFF2992 at 423.544 kb on + strand, within GFF2992 at 423.544 kb on + strand, within GFF2992 at 423.544 kb on + strand, within GFF2992 at 423.544 kb on + strand, within GFF2992 at 423.544 kb on + strand, within GFF2992 at 423.625 kb on - strand, within GFF2992 at 423.625 kb on - strand, within GFF2992 at 423.798 kb on + strand, within GFF2992 at 423.798 kb on + strand, within GFF2992 at 423.799 kb on - strand, within GFF2992 at 423.799 kb on - strand, within GFF2992 at 423.799 kb on - strand, within GFF2992 at 423.799 kb on - strand, within GFF2992 at 424.277 kb on + strand, within GFF2993 at 424.278 kb on - strand, within GFF2993 at 424.465 kb on + strand, within GFF2993 at 424.465 kb on + strand, within GFF2993 at 424.465 kb on + strand, within GFF2993 at 424.465 kb on + strand, within GFF2993 at 424.465 kb on + strand, within GFF2993 at 424.465 kb on + strand, within GFF2993 at 424.466 kb on - strand, within GFF2993 at 424.466 kb on - strand, within GFF2993 at 425.090 kb on + strand, within GFF2993 at 425.090 kb on + strand, within GFF2993 at 425.091 kb on - strand, within GFF2993 at 425.091 kb on - strand, within GFF2993
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 422,591 + GFF2991 0.67 -0.6 422,591 + GFF2991 0.67 -0.9 422,684 + GFF2991 0.77 +0.1 422,684 + GFF2991 0.77 -0.4 422,684 + GFF2991 0.77 +0.1 422,684 + GFF2991 0.77 +0.0 422,684 + GFF2991 0.77 +2.1 422,685 - GFF2991 0.77 +2.2 422,685 - GFF2991 0.77 +0.0 422,685 - GFF2991 0.77 +1.4 423,072 + +0.4 423,072 + -0.4 423,072 + -0.3 423,073 - +0.2 423,073 - -0.2 423,117 + -0.0 423,117 + +0.9 423,117 + +1.1 423,128 - +2.5 423,333 + GFF2992 0.22 -0.5 423,334 - GFF2992 0.22 -1.0 423,537 + GFF2992 0.43 +0.1 423,537 + GFF2992 0.43 +0.3 423,537 + GFF2992 0.43 +0.8 423,537 + GFF2992 0.43 -0.5 423,537 + GFF2992 0.43 -0.5 423,537 + GFF2992 0.43 +0.8 423,537 + GFF2992 0.43 -0.6 423,537 + GFF2992 0.43 -0.4 423,538 - GFF2992 0.43 -1.0 423,538 - GFF2992 0.43 +0.2 423,538 - GFF2992 0.43 -0.0 423,538 - GFF2992 0.43 -0.6 423,544 + GFF2992 0.43 +0.2 423,544 + GFF2992 0.43 -1.3 423,544 + GFF2992 0.43 -0.3 423,544 + GFF2992 0.43 -1.8 423,544 + GFF2992 0.43 -0.4 423,625 - GFF2992 0.51 +0.1 423,625 - GFF2992 0.51 -0.2 423,798 + GFF2992 0.69 +0.4 423,798 + GFF2992 0.69 -1.4 423,799 - GFF2992 0.69 -0.6 423,799 - GFF2992 0.69 -0.8 423,799 - GFF2992 0.69 +1.3 423,799 - GFF2992 0.69 -0.9 424,277 + GFF2993 0.11 -0.5 424,278 - GFF2993 0.11 +0.6 424,465 + GFF2993 0.25 +0.2 424,465 + GFF2993 0.25 -0.3 424,465 + GFF2993 0.25 +0.6 424,465 + GFF2993 0.25 -0.0 424,465 + GFF2993 0.25 -0.3 424,465 + GFF2993 0.25 -0.3 424,466 - GFF2993 0.25 -1.3 424,466 - GFF2993 0.25 +0.1 425,090 + GFF2993 0.68 +0.9 425,090 + GFF2993 0.68 +1.8 425,091 - GFF2993 0.68 -1.1 425,091 - GFF2993 0.68 -1.6
Or see this region's nucleotide sequence