Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2972 and GFF2973 are separated by 119 nucleotides GFF2973 and GFF2974 are separated by 62 nucleotides GFF2974 and GFF2975 are separated by 35 nucleotides
GFF2972 - Radical SAM domain protein, at 404,241 to 405,335
GFF2972
GFF2973 - Transcriptional regulator, at 405,455 to 406,033
GFF2973
GFF2974 - Cell division inhibitor, at 406,096 to 406,518
GFF2974
GFF2975 - SAM-dependent methyltransferase, at 406,554 to 407,510
GFF2975
Position (kb) 406
407 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 405.115 kb on + strand, within GFF2972 at 405.115 kb on + strand, within GFF2972 at 405.115 kb on + strand, within GFF2972 at 405.116 kb on - strand, within GFF2972 at 405.116 kb on - strand, within GFF2972 at 405.116 kb on - strand, within GFF2972 at 405.116 kb on - strand, within GFF2972 at 405.358 kb on - strand at 405.365 kb on - strand at 405.375 kb on + strand at 405.698 kb on + strand, within GFF2973 at 406.136 kb on - strand at 406.136 kb on - strand at 406.136 kb on - strand at 406.414 kb on + strand, within GFF2974 at 406.415 kb on - strand, within GFF2974 at 406.415 kb on - strand, within GFF2974 at 406.439 kb on - strand, within GFF2974 at 406.559 kb on + strand at 406.559 kb on + strand at 406.560 kb on - strand at 406.659 kb on + strand, within GFF2975 at 406.659 kb on + strand, within GFF2975 at 406.659 kb on + strand, within GFF2975 at 406.659 kb on + strand, within GFF2975 at 406.659 kb on + strand, within GFF2975 at 406.659 kb on + strand, within GFF2975 at 406.659 kb on + strand, within GFF2975 at 406.659 kb on + strand, within GFF2975 at 406.659 kb on + strand, within GFF2975 at 406.660 kb on - strand, within GFF2975 at 406.660 kb on - strand, within GFF2975 at 406.660 kb on - strand, within GFF2975 at 406.660 kb on - strand, within GFF2975 at 406.660 kb on - strand, within GFF2975 at 406.660 kb on - strand, within GFF2975 at 406.683 kb on + strand, within GFF2975 at 406.683 kb on + strand, within GFF2975 at 406.704 kb on + strand, within GFF2975 at 406.704 kb on + strand, within GFF2975 at 406.704 kb on + strand, within GFF2975 at 406.704 kb on + strand, within GFF2975 at 406.704 kb on + strand, within GFF2975 at 406.705 kb on - strand, within GFF2975 at 406.705 kb on - strand, within GFF2975 at 406.705 kb on - strand, within GFF2975 at 406.705 kb on - strand, within GFF2975 at 406.705 kb on - strand, within GFF2975 at 406.705 kb on - strand, within GFF2975 at 406.705 kb on - strand, within GFF2975 at 406.705 kb on - strand, within GFF2975 at 406.705 kb on - strand, within GFF2975 at 406.705 kb on - strand, within GFF2975 at 406.705 kb on - strand, within GFF2975 at 406.909 kb on - strand, within GFF2975 at 406.909 kb on - strand, within GFF2975 at 406.909 kb on - strand, within GFF2975 at 407.010 kb on + strand, within GFF2975 at 407.011 kb on - strand, within GFF2975 at 407.011 kb on - strand, within GFF2975 at 407.074 kb on - strand, within GFF2975 at 407.433 kb on + strand at 407.433 kb on + strand at 407.433 kb on + strand at 407.433 kb on + strand at 407.434 kb on - strand at 407.434 kb on - strand at 407.434 kb on - strand at 407.434 kb on - strand at 407.434 kb on - strand at 407.434 kb on - strand at 407.434 kb on - strand at 407.475 kb on + strand at 407.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 405,115 + GFF2972 0.80 -0.3 405,115 + GFF2972 0.80 +0.3 405,115 + GFF2972 0.80 +0.8 405,116 - GFF2972 0.80 -0.1 405,116 - GFF2972 0.80 -1.2 405,116 - GFF2972 0.80 +0.4 405,116 - GFF2972 0.80 -0.7 405,358 - +0.5 405,365 - +0.5 405,375 + -0.6 405,698 + GFF2973 0.42 -0.2 406,136 - +0.5 406,136 - +3.4 406,136 - -0.1 406,414 + GFF2974 0.75 -1.2 406,415 - GFF2974 0.75 -0.7 406,415 - GFF2974 0.75 -0.5 406,439 - GFF2974 0.81 -1.1 406,559 + -0.4 406,559 + +0.1 406,560 - +0.0 406,659 + GFF2975 0.11 -0.8 406,659 + GFF2975 0.11 +0.1 406,659 + GFF2975 0.11 -1.1 406,659 + GFF2975 0.11 +1.1 406,659 + GFF2975 0.11 -1.9 406,659 + GFF2975 0.11 +0.2 406,659 + GFF2975 0.11 -0.3 406,659 + GFF2975 0.11 -0.4 406,659 + GFF2975 0.11 +1.3 406,660 - GFF2975 0.11 -1.0 406,660 - GFF2975 0.11 -0.6 406,660 - GFF2975 0.11 +1.4 406,660 - GFF2975 0.11 -0.2 406,660 - GFF2975 0.11 -0.4 406,660 - GFF2975 0.11 -1.0 406,683 + GFF2975 0.13 +0.1 406,683 + GFF2975 0.13 +1.1 406,704 + GFF2975 0.16 -0.1 406,704 + GFF2975 0.16 +0.0 406,704 + GFF2975 0.16 -0.4 406,704 + GFF2975 0.16 -1.1 406,704 + GFF2975 0.16 -1.0 406,705 - GFF2975 0.16 -0.7 406,705 - GFF2975 0.16 +1.0 406,705 - GFF2975 0.16 -0.8 406,705 - GFF2975 0.16 +0.3 406,705 - GFF2975 0.16 +0.3 406,705 - GFF2975 0.16 -0.3 406,705 - GFF2975 0.16 +0.5 406,705 - GFF2975 0.16 -1.3 406,705 - GFF2975 0.16 +0.6 406,705 - GFF2975 0.16 -0.3 406,705 - GFF2975 0.16 +0.3 406,909 - GFF2975 0.37 +0.4 406,909 - GFF2975 0.37 -1.3 406,909 - GFF2975 0.37 -1.0 407,010 + GFF2975 0.48 -0.8 407,011 - GFF2975 0.48 +0.4 407,011 - GFF2975 0.48 -0.6 407,074 - GFF2975 0.54 -1.2 407,433 + -0.5 407,433 + -1.3 407,433 + +0.3 407,433 + +1.1 407,434 - -0.4 407,434 - -0.7 407,434 - +0.4 407,434 - +0.1 407,434 - -0.7 407,434 - -0.1 407,434 - +0.8 407,475 + -0.6 407,476 - +0.5
Or see this region's nucleotide sequence