Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2906 and GFF2907 are separated by 13 nucleotides GFF2907 and GFF2908 are separated by 2 nucleotides
GFF2906 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 333,085 to 334,521
GFF2906
GFF2907 - Glucarate dehydratase (EC 4.2.1.40), at 334,535 to 335,893
GFF2907
GFF2908 - BUG/TctC family periplasmic protein, at 335,896 to 336,897
GFF2908
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1
2 at 333.642 kb on - strand, within GFF2906 at 333.698 kb on + strand, within GFF2906 at 333.698 kb on + strand, within GFF2906 at 333.699 kb on - strand, within GFF2906 at 333.699 kb on - strand, within GFF2906 at 334.421 kb on + strand at 334.469 kb on + strand at 334.469 kb on + strand at 334.470 kb on - strand at 334.470 kb on - strand at 334.470 kb on - strand at 334.470 kb on - strand at 334.470 kb on - strand at 334.587 kb on + strand at 334.636 kb on - strand at 334.636 kb on - strand at 335.100 kb on + strand, within GFF2907 at 335.101 kb on - strand, within GFF2907 at 335.382 kb on + strand, within GFF2907 at 335.382 kb on + strand, within GFF2907 at 335.415 kb on + strand, within GFF2907 at 335.415 kb on + strand, within GFF2907 at 335.416 kb on - strand, within GFF2907 at 335.438 kb on + strand, within GFF2907 at 335.887 kb on + strand at 335.887 kb on + strand at 335.888 kb on - strand at 336.122 kb on + strand, within GFF2908 at 336.122 kb on + strand, within GFF2908 at 336.123 kb on - strand, within GFF2908 at 336.123 kb on - strand, within GFF2908 at 336.123 kb on - strand, within GFF2908 at 336.317 kb on + strand, within GFF2908 at 336.318 kb on - strand, within GFF2908 at 336.318 kb on - strand, within GFF2908 at 336.318 kb on - strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.519 kb on - strand, within GFF2908 at 336.519 kb on - strand, within GFF2908 at 336.543 kb on - strand, within GFF2908 at 336.608 kb on + strand, within GFF2908 at 336.609 kb on - strand, within GFF2908 at 336.609 kb on - strand, within GFF2908 at 336.874 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 333,642 - GFF2906 0.39 +1.7 333,698 + GFF2906 0.43 +1.3 333,698 + GFF2906 0.43 -0.3 333,699 - GFF2906 0.43 +0.4 333,699 - GFF2906 0.43 -0.8 334,421 + +0.1 334,469 + +0.5 334,469 + +0.9 334,470 - -0.3 334,470 - +0.9 334,470 - -0.1 334,470 - +1.2 334,470 - -1.1 334,587 + -0.7 334,636 - +0.7 334,636 - -0.7 335,100 + GFF2907 0.42 -1.2 335,101 - GFF2907 0.42 -0.3 335,382 + GFF2907 0.62 +0.6 335,382 + GFF2907 0.62 +0.9 335,415 + GFF2907 0.65 -0.4 335,415 + GFF2907 0.65 -0.7 335,416 - GFF2907 0.65 +0.7 335,438 + GFF2907 0.66 -1.2 335,887 + -0.7 335,887 + +0.7 335,888 - +0.2 336,122 + GFF2908 0.23 +1.2 336,122 + GFF2908 0.23 +0.2 336,123 - GFF2908 0.23 +1.1 336,123 - GFF2908 0.23 -1.1 336,123 - GFF2908 0.23 +0.0 336,317 + GFF2908 0.42 +0.1 336,318 - GFF2908 0.42 +0.2 336,318 - GFF2908 0.42 +0.0 336,318 - GFF2908 0.42 +0.3 336,518 + GFF2908 0.62 +1.9 336,518 + GFF2908 0.62 -2.1 336,518 + GFF2908 0.62 +0.2 336,518 + GFF2908 0.62 -1.6 336,519 - GFF2908 0.62 -0.3 336,519 - GFF2908 0.62 -0.9 336,543 - GFF2908 0.65 -0.1 336,608 + GFF2908 0.71 +0.1 336,609 - GFF2908 0.71 -0.1 336,609 - GFF2908 0.71 -0.4 336,874 - +0.2
Or see this region's nucleotide sequence