Strain Fitness in Variovorax sp. SCN45 around GFF2855

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2854 and GFF2855 overlap by 4 nucleotidesGFF2855 and GFF2856 are separated by 38 nucleotides GFF2854 - D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83), at 277,374 to 278,459 GFF2854 GFF2855 - Putative hydrolase or acyltransferase, at 278,456 to 279,400 GFF2855 GFF2856 - Transcriptional regulator, LysR family, at 279,439 to 280,398 GFF2856 Position (kb) 278 279 280Strain fitness (log2 ratio) -2 -1 0 1 2 3at 277.811 kb on - strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.029 kb on + strand, within GFF2854at 278.029 kb on + strand, within GFF2854at 278.029 kb on + strand, within GFF2854at 278.030 kb on - strand, within GFF2854at 278.030 kb on - strand, within GFF2854at 278.030 kb on - strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.155 kb on + strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.311 kb on + strand, within GFF2854at 278.311 kb on + strand, within GFF2854at 278.311 kb on + strand, within GFF2854at 278.312 kb on - strand, within GFF2854at 278.312 kb on - strand, within GFF2854at 278.312 kb on - strand, within GFF2854at 278.312 kb on - strand, within GFF2854at 278.314 kb on + strand, within GFF2854at 278.314 kb on + strand, within GFF2854at 278.314 kb on + strand, within GFF2854at 278.314 kb on + strand, within GFF2854at 278.314 kb on + strand, within GFF2854at 278.315 kb on - strand, within GFF2854at 278.315 kb on - strand, within GFF2854at 278.315 kb on - strand, within GFF2854at 278.315 kb on - strand, within GFF2854at 278.541 kb on + strandat 278.541 kb on + strandat 278.541 kb on + strandat 278.541 kb on + strandat 278.541 kb on + strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.728 kb on - strand, within GFF2855at 278.728 kb on - strand, within GFF2855at 278.779 kb on - strand, within GFF2855at 278.847 kb on + strand, within GFF2855at 278.847 kb on + strand, within GFF2855at 278.847 kb on + strand, within GFF2855at 278.848 kb on - strand, within GFF2855at 278.848 kb on - strand, within GFF2855at 278.848 kb on - strand, within GFF2855at 278.919 kb on + strand, within GFF2855at 278.919 kb on + strand, within GFF2855at 278.919 kb on + strand, within GFF2855at 278.920 kb on - strand, within GFF2855at 278.920 kb on - strand, within GFF2855at 278.920 kb on - strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.424 kb on - strandat 279.865 kb on + strand, within GFF2856at 279.865 kb on + strand, within GFF2856at 279.865 kb on + strand, within GFF2856at 279.865 kb on + strand, within GFF2856at 279.866 kb on - strand, within GFF2856at 279.866 kb on - strand, within GFF2856at 279.866 kb on - strand, within GFF2856at 279.866 kb on - strand, within GFF2856at 279.866 kb on - strand, within GFF2856at 279.866 kb on - strand, within GFF2856at 279.866 kb on - strand, within GFF2856at 279.866 kb on - strand, within GFF2856at 279.970 kb on + strand, within GFF2856at 279.970 kb on + strand, within GFF2856at 279.971 kb on - strand, within GFF2856at 279.971 kb on - strand, within GFF2856at 280.400 kb on + strandat 280.400 kb on + strandat 280.400 kb on + strandat 280.400 kb on + strandat 280.400 kb on + strandat 280.400 kb on + strandat 280.400 kb on + strandat 280.400 kb on + strandat 280.400 kb on + strandat 280.400 kb on + strandat 280.400 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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277,811 - GFF2854 0.40 -0.1
278,005 + GFF2854 0.58 +1.4
278,005 + GFF2854 0.58 -0.5
278,005 + GFF2854 0.58 +0.0
278,005 + GFF2854 0.58 -0.5
278,005 + GFF2854 0.58 -1.1
278,005 + GFF2854 0.58 +0.2
278,005 + GFF2854 0.58 -0.1
278,006 - GFF2854 0.58 -0.2
278,006 - GFF2854 0.58 -1.5
278,006 - GFF2854 0.58 +0.9
278,006 - GFF2854 0.58 -0.4
278,006 - GFF2854 0.58 -0.1
278,006 - GFF2854 0.58 -1.1
278,006 - GFF2854 0.58 +0.6
278,029 + GFF2854 0.60 -0.2
278,029 + GFF2854 0.60 -0.4
278,029 + GFF2854 0.60 -0.3
278,030 - GFF2854 0.60 -0.6
278,030 - GFF2854 0.60 -0.9
278,030 - GFF2854 0.60 -0.4
278,059 + GFF2854 0.63 +0.4
278,059 + GFF2854 0.63 -1.1
278,059 + GFF2854 0.63 +0.9
278,059 + GFF2854 0.63 -0.8
278,059 + GFF2854 0.63 +0.6
278,059 + GFF2854 0.63 -1.1
278,059 + GFF2854 0.63 -0.2
278,059 + GFF2854 0.63 +2.4
278,059 + GFF2854 0.63 -1.8
278,059 + GFF2854 0.63 +0.3
278,059 + GFF2854 0.63 -0.5
278,059 + GFF2854 0.63 +0.0
278,059 + GFF2854 0.63 -0.2
278,059 + GFF2854 0.63 -1.0
278,059 + GFF2854 0.63 -0.9
278,059 + GFF2854 0.63 +1.1
278,059 + GFF2854 0.63 +0.6
278,059 + GFF2854 0.63 -0.1
278,059 + GFF2854 0.63 +0.2
278,059 + GFF2854 0.63 +0.5
278,059 + GFF2854 0.63 -0.5
278,059 + GFF2854 0.63 -0.3
278,059 + GFF2854 0.63 +0.1
278,059 + GFF2854 0.63 -0.5
278,059 + GFF2854 0.63 -0.1
278,059 + GFF2854 0.63 -1.1
278,059 + GFF2854 0.63 -0.9
278,059 + GFF2854 0.63 -1.3
278,059 + GFF2854 0.63 +0.1
278,059 + GFF2854 0.63 -1.0
278,059 + GFF2854 0.63 -1.2
278,059 + GFF2854 0.63 -0.6
278,060 - GFF2854 0.63 -1.1
278,060 - GFF2854 0.63 -0.4
278,060 - GFF2854 0.63 -0.2
278,060 - GFF2854 0.63 -0.8
278,060 - GFF2854 0.63 -1.5
278,060 - GFF2854 0.63 +0.0
278,060 - GFF2854 0.63 +2.9
278,060 - GFF2854 0.63 +1.1
278,060 - GFF2854 0.63 -0.9
278,060 - GFF2854 0.63 -0.1
278,060 - GFF2854 0.63 -0.7
278,060 - GFF2854 0.63 +0.1
278,060 - GFF2854 0.63 -0.2
278,060 - GFF2854 0.63 +0.8
278,060 - GFF2854 0.63 -0.7
278,060 - GFF2854 0.63 +0.4
278,060 - GFF2854 0.63 -0.1
278,060 - GFF2854 0.63 -0.9
278,060 - GFF2854 0.63 +1.7
278,060 - GFF2854 0.63 -0.1
278,060 - GFF2854 0.63 -0.3
278,060 - GFF2854 0.63 -1.1
278,155 + GFF2854 0.72 -0.7
278,156 - GFF2854 0.72 -0.5
278,156 - GFF2854 0.72 +0.5
278,156 - GFF2854 0.72 -0.4
278,156 - GFF2854 0.72 -0.9
278,156 - GFF2854 0.72 +0.6
278,156 - GFF2854 0.72 -0.6
278,156 - GFF2854 0.72 +0.2
278,311 + GFF2854 0.86 -0.2
278,311 + GFF2854 0.86 +0.7
278,311 + GFF2854 0.86 +0.1
278,312 - GFF2854 0.86 -1.2
278,312 - GFF2854 0.86 -0.2
278,312 - GFF2854 0.86 +1.1
278,312 - GFF2854 0.86 +0.3
278,314 + GFF2854 0.87 -1.8
278,314 + GFF2854 0.87 +0.2
278,314 + GFF2854 0.87 -1.1
278,314 + GFF2854 0.87 -0.0
278,314 + GFF2854 0.87 -1.2
278,315 - GFF2854 0.87 +0.9
278,315 - GFF2854 0.87 +1.9
278,315 - GFF2854 0.87 -1.0
278,315 - GFF2854 0.87 +0.3
278,541 + +0.0
278,541 + +0.6
278,541 + -0.4
278,541 + -1.4
278,541 + -1.4
278,542 - -0.4
278,542 - -0.9
278,542 - -0.1
278,542 - +0.0
278,542 - -1.3
278,542 - -0.2
278,542 - +0.0
278,542 - +0.5
278,542 - -1.6
278,542 - -0.8
278,542 - -0.1
278,542 - +0.4
278,542 - +0.4
278,728 - GFF2855 0.29 -1.1
278,728 - GFF2855 0.29 +0.4
278,779 - GFF2855 0.34 -0.9
278,847 + GFF2855 0.41 -1.3
278,847 + GFF2855 0.41 -0.5
278,847 + GFF2855 0.41 +0.4
278,848 - GFF2855 0.41 -1.2
278,848 - GFF2855 0.41 -0.6
278,848 - GFF2855 0.41 +0.4
278,919 + GFF2855 0.49 +0.5
278,919 + GFF2855 0.49 +1.0
278,919 + GFF2855 0.49 -0.3
278,920 - GFF2855 0.49 -0.1
278,920 - GFF2855 0.49 +1.4
278,920 - GFF2855 0.49 -0.2
278,952 + GFF2855 0.52 -0.5
278,952 + GFF2855 0.52 -0.2
278,952 + GFF2855 0.52 -0.7
278,952 + GFF2855 0.52 +0.7
278,952 + GFF2855 0.52 -1.6
278,952 + GFF2855 0.52 +0.1
278,952 + GFF2855 0.52 -0.5
278,952 + GFF2855 0.52 -0.6
278,952 + GFF2855 0.52 -0.1
278,952 + GFF2855 0.52 -0.0
278,952 + GFF2855 0.52 -0.1
278,952 + GFF2855 0.52 -0.6
278,952 + GFF2855 0.52 -0.0
278,952 + GFF2855 0.52 +0.6
278,953 - GFF2855 0.53 -0.6
278,953 - GFF2855 0.53 -1.4
278,953 - GFF2855 0.53 -0.5
278,953 - GFF2855 0.53 -1.5
278,953 - GFF2855 0.53 -0.4
278,953 - GFF2855 0.53 -0.1
278,953 - GFF2855 0.53 +0.3
278,953 - GFF2855 0.53 +0.6
279,129 + GFF2855 0.71 -0.8
279,129 + GFF2855 0.71 +0.0
279,129 + GFF2855 0.71 -0.2
279,129 + GFF2855 0.71 -0.4
279,129 + GFF2855 0.71 -0.4
279,129 + GFF2855 0.71 +0.9
279,130 - GFF2855 0.71 -0.3
279,130 - GFF2855 0.71 -0.5
279,130 - GFF2855 0.71 -1.2
279,130 - GFF2855 0.71 -0.7
279,130 - GFF2855 0.71 -0.6
279,130 - GFF2855 0.71 +0.2
279,130 - GFF2855 0.71 -0.4
279,424 - +1.0
279,865 + GFF2856 0.44 +0.4
279,865 + GFF2856 0.44 +0.5
279,865 + GFF2856 0.44 -1.2
279,865 + GFF2856 0.44 +0.4
279,866 - GFF2856 0.44 -0.3
279,866 - GFF2856 0.44 -0.1
279,866 - GFF2856 0.44 -0.1
279,866 - GFF2856 0.44 -0.8
279,866 - GFF2856 0.44 -0.2
279,866 - GFF2856 0.44 +0.2
279,866 - GFF2856 0.44 -1.2
279,866 - GFF2856 0.44 +0.5
279,970 + GFF2856 0.55 +0.6
279,970 + GFF2856 0.55 -0.9
279,971 - GFF2856 0.55 -0.5
279,971 - GFF2856 0.55 -0.8
280,400 + -1.3
280,400 + -0.1
280,400 + +0.3
280,400 + +0.0
280,400 + -0.2
280,400 + -0.5
280,400 + +0.0
280,400 + -0.7
280,400 + -0.3
280,400 + +0.1
280,400 + -0.7

Or see this region's nucleotide sequence