Strain Fitness in Variovorax sp. SCN45 around GFF2835

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2833 and GFF2834 are separated by 114 nucleotidesGFF2834 and GFF2835 are separated by 77 nucleotidesGFF2835 and GFF2836 are separated by 22 nucleotidesGFF2836 and GFF2837 are separated by 5 nucleotides GFF2833 - PKHD-type hydroxylase YbiX, at 260,750 to 261,430 GFF2833 GFF2834 - Bacterioferritin-associated ferredoxin, at 261,545 to 261,817 GFF2834 GFF2835 - putative TonB-dependent receptor, at 261,895 to 262,620 GFF2835 GFF2836 - MotA/TolQ/ExbB proton channel family protein, at 262,643 to 263,356 GFF2836 GFF2837 - Biopolymer transport protein ExbD/TolR, at 263,362 to 263,775 GFF2837 Position (kb) 261 262 263Strain fitness (log2 ratio) -2 -1 0 1 2at 261.008 kb on + strand, within GFF2833at 261.008 kb on + strand, within GFF2833at 261.009 kb on - strand, within GFF2833at 261.026 kb on + strand, within GFF2833at 261.026 kb on + strand, within GFF2833at 261.027 kb on - strand, within GFF2833at 261.027 kb on - strand, within GFF2833at 261.128 kb on + strand, within GFF2833at 261.128 kb on + strand, within GFF2833at 261.128 kb on + strand, within GFF2833at 261.128 kb on + strand, within GFF2833at 261.128 kb on + strand, within GFF2833at 261.128 kb on + strand, within GFF2833at 261.128 kb on + strand, within GFF2833at 261.128 kb on + strand, within GFF2833at 261.128 kb on + strand, within GFF2833at 261.129 kb on - strand, within GFF2833at 261.129 kb on - strand, within GFF2833at 261.129 kb on - strand, within GFF2833at 261.129 kb on - strand, within GFF2833at 261.129 kb on - strand, within GFF2833at 261.129 kb on - strand, within GFF2833at 261.161 kb on + strand, within GFF2833at 261.161 kb on + strand, within GFF2833at 261.161 kb on + strand, within GFF2833at 261.161 kb on + strand, within GFF2833at 261.161 kb on + strand, within GFF2833at 261.161 kb on + strand, within GFF2833at 261.161 kb on + strand, within GFF2833at 261.161 kb on + strand, within GFF2833at 261.161 kb on + strand, within GFF2833at 261.161 kb on + strand, within GFF2833at 261.161 kb on + strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.162 kb on - strand, within GFF2833at 261.395 kb on + strandat 261.395 kb on + strandat 261.395 kb on + strandat 261.395 kb on + strandat 261.395 kb on + strandat 261.395 kb on + strandat 261.395 kb on + strandat 261.395 kb on + strandat 261.396 kb on - strandat 261.396 kb on - strandat 261.396 kb on - strandat 261.396 kb on - strandat 261.460 kb on + strandat 261.461 kb on - strandat 261.468 kb on + strandat 261.468 kb on + strandat 261.468 kb on + strandat 261.468 kb on + strandat 261.468 kb on + strandat 261.469 kb on - strandat 261.469 kb on - strandat 261.469 kb on - strandat 261.856 kb on + strandat 261.856 kb on + strandat 261.856 kb on + strandat 261.856 kb on + strandat 261.856 kb on + strandat 261.857 kb on - strandat 261.857 kb on - strandat 261.857 kb on - strandat 261.877 kb on - strandat 261.917 kb on + strandat 261.918 kb on - strandat 261.918 kb on - strandat 262.161 kb on + strand, within GFF2835at 262.161 kb on + strand, within GFF2835at 262.161 kb on + strand, within GFF2835at 262.162 kb on - strand, within GFF2835at 262.367 kb on - strand, within GFF2835at 262.390 kb on + strand, within GFF2835at 262.528 kb on + strand, within GFF2835at 262.528 kb on + strand, within GFF2835at 262.528 kb on + strand, within GFF2835at 262.528 kb on + strand, within GFF2835at 262.529 kb on - strand, within GFF2835at 262.529 kb on - strand, within GFF2835at 262.529 kb on - strand, within GFF2835at 262.529 kb on - strand, within GFF2835at 262.529 kb on - strand, within GFF2835at 262.529 kb on - strand, within GFF2835at 262.529 kb on - strand, within GFF2835at 262.588 kb on + strandat 262.588 kb on + strandat 262.588 kb on + strandat 262.588 kb on + strandat 262.588 kb on + strandat 262.588 kb on + strandat 262.588 kb on + strandat 262.588 kb on + strandat 262.589 kb on - strandat 262.606 kb on + strandat 262.606 kb on + strandat 262.607 kb on - strandat 262.607 kb on - strandat 262.618 kb on + strandat 262.618 kb on + strandat 262.619 kb on - strandat 262.642 kb on + strandat 262.642 kb on + strandat 262.642 kb on + strandat 262.643 kb on - strandat 262.643 kb on - strandat 262.643 kb on - strandat 262.643 kb on - strandat 262.778 kb on + strand, within GFF2836at 262.778 kb on + strand, within GFF2836at 262.779 kb on - strand, within GFF2836at 262.779 kb on - strand, within GFF2836at 263.090 kb on + strand, within GFF2836at 263.090 kb on + strand, within GFF2836at 263.090 kb on + strand, within GFF2836at 263.090 kb on + strand, within GFF2836at 263.090 kb on + strand, within GFF2836at 263.090 kb on + strand, within GFF2836at 263.090 kb on + strand, within GFF2836at 263.090 kb on + strand, within GFF2836at 263.090 kb on + strand, within GFF2836at 263.090 kb on + strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.091 kb on - strand, within GFF2836at 263.216 kb on + strand, within GFF2836at 263.216 kb on + strand, within GFF2836at 263.216 kb on + strand, within GFF2836at 263.288 kb on + strandat 263.288 kb on + strandat 263.288 kb on + strandat 263.289 kb on - strandat 263.289 kb on - strandat 263.575 kb on + strand, within GFF2837at 263.576 kb on - strand, within GFF2837at 263.578 kb on + strand, within GFF2837at 263.578 kb on + strand, within GFF2837

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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261,008 + GFF2833 0.38 +1.4
261,008 + GFF2833 0.38 -0.5
261,009 - GFF2833 0.38 -0.9
261,026 + GFF2833 0.41 -1.9
261,026 + GFF2833 0.41 +0.1
261,027 - GFF2833 0.41 -0.6
261,027 - GFF2833 0.41 -0.1
261,128 + GFF2833 0.56 -0.5
261,128 + GFF2833 0.56 -1.0
261,128 + GFF2833 0.56 -0.2
261,128 + GFF2833 0.56 -0.8
261,128 + GFF2833 0.56 +0.3
261,128 + GFF2833 0.56 -0.3
261,128 + GFF2833 0.56 -0.6
261,128 + GFF2833 0.56 -0.4
261,128 + GFF2833 0.56 +0.0
261,129 - GFF2833 0.56 +1.3
261,129 - GFF2833 0.56 -0.1
261,129 - GFF2833 0.56 -0.5
261,129 - GFF2833 0.56 +1.9
261,129 - GFF2833 0.56 +0.3
261,129 - GFF2833 0.56 -0.5
261,161 + GFF2833 0.60 -0.6
261,161 + GFF2833 0.60 -0.2
261,161 + GFF2833 0.60 -1.2
261,161 + GFF2833 0.60 -0.4
261,161 + GFF2833 0.60 +0.1
261,161 + GFF2833 0.60 -2.0
261,161 + GFF2833 0.60 +0.7
261,161 + GFF2833 0.60 -1.5
261,161 + GFF2833 0.60 -0.1
261,161 + GFF2833 0.60 -0.6
261,161 + GFF2833 0.60 -1.7
261,162 - GFF2833 0.60 +0.7
261,162 - GFF2833 0.60 -1.0
261,162 - GFF2833 0.60 -0.1
261,162 - GFF2833 0.60 -0.9
261,162 - GFF2833 0.60 +0.3
261,162 - GFF2833 0.60 -0.4
261,162 - GFF2833 0.60 -2.0
261,162 - GFF2833 0.60 -0.1
261,162 - GFF2833 0.60 -0.2
261,162 - GFF2833 0.60 -0.1
261,162 - GFF2833 0.60 -0.5
261,162 - GFF2833 0.60 -0.7
261,162 - GFF2833 0.60 -0.3
261,162 - GFF2833 0.60 -0.7
261,162 - GFF2833 0.60 -1.2
261,162 - GFF2833 0.60 -0.2
261,162 - GFF2833 0.60 -0.4
261,162 - GFF2833 0.60 -0.4
261,162 - GFF2833 0.60 +0.5
261,162 - GFF2833 0.60 -0.1
261,162 - GFF2833 0.60 -1.0
261,162 - GFF2833 0.60 -0.7
261,395 + +0.0
261,395 + -0.9
261,395 + +0.3
261,395 + -1.8
261,395 + -0.0
261,395 + +0.8
261,395 + -1.0
261,395 + -0.2
261,396 - -0.7
261,396 - +0.2
261,396 - +0.3
261,396 - -0.1
261,460 + +0.0
261,461 - -0.5
261,468 + +0.2
261,468 + +1.2
261,468 + -0.1
261,468 + -0.1
261,468 + +0.8
261,469 - -0.2
261,469 - -0.8
261,469 - -0.9
261,856 + +0.2
261,856 + +0.1
261,856 + -0.1
261,856 + -0.8
261,856 + +0.2
261,857 - -0.2
261,857 - -0.5
261,857 - -0.1
261,877 - +0.6
261,917 + -1.1
261,918 - +1.3
261,918 - -1.9
262,161 + GFF2835 0.37 -1.5
262,161 + GFF2835 0.37 -0.9
262,161 + GFF2835 0.37 -0.9
262,162 - GFF2835 0.37 -0.4
262,367 - GFF2835 0.65 -0.9
262,390 + GFF2835 0.68 -2.0
262,528 + GFF2835 0.87 -1.5
262,528 + GFF2835 0.87 -0.4
262,528 + GFF2835 0.87 -1.4
262,528 + GFF2835 0.87 +0.3
262,529 - GFF2835 0.87 +1.3
262,529 - GFF2835 0.87 -1.2
262,529 - GFF2835 0.87 -2.5
262,529 - GFF2835 0.87 +0.9
262,529 - GFF2835 0.87 -0.1
262,529 - GFF2835 0.87 +0.2
262,529 - GFF2835 0.87 -1.4
262,588 + -0.7
262,588 + -0.4
262,588 + +1.9
262,588 + +0.3
262,588 + +0.3
262,588 + -0.7
262,588 + +0.4
262,588 + +2.5
262,589 - -0.7
262,606 + -0.2
262,606 + +0.3
262,607 - +0.9
262,607 - -1.4
262,618 + -1.3
262,618 + +0.3
262,619 - -2.1
262,642 + +1.2
262,642 + +0.1
262,642 + -1.2
262,643 - +0.3
262,643 - -0.1
262,643 - -1.2
262,643 - +0.7
262,778 + GFF2836 0.19 -0.1
262,778 + GFF2836 0.19 -0.1
262,779 - GFF2836 0.19 -0.9
262,779 - GFF2836 0.19 -0.1
263,090 + GFF2836 0.63 -0.5
263,090 + GFF2836 0.63 -0.1
263,090 + GFF2836 0.63 -0.5
263,090 + GFF2836 0.63 +0.6
263,090 + GFF2836 0.63 -0.4
263,090 + GFF2836 0.63 -1.4
263,090 + GFF2836 0.63 -0.7
263,090 + GFF2836 0.63 -1.5
263,090 + GFF2836 0.63 -1.4
263,090 + GFF2836 0.63 -0.4
263,091 - GFF2836 0.63 -1.5
263,091 - GFF2836 0.63 +1.5
263,091 - GFF2836 0.63 -1.2
263,091 - GFF2836 0.63 -1.1
263,091 - GFF2836 0.63 -2.2
263,091 - GFF2836 0.63 -0.3
263,091 - GFF2836 0.63 -1.1
263,091 - GFF2836 0.63 +0.3
263,091 - GFF2836 0.63 -0.7
263,091 - GFF2836 0.63 -1.1
263,091 - GFF2836 0.63 -0.7
263,091 - GFF2836 0.63 +0.7
263,091 - GFF2836 0.63 -0.7
263,091 - GFF2836 0.63 -1.4
263,091 - GFF2836 0.63 -1.7
263,091 - GFF2836 0.63 -0.1
263,216 + GFF2836 0.80 -1.1
263,216 + GFF2836 0.80 +0.1
263,216 + GFF2836 0.80 -1.4
263,288 + -1.1
263,288 + -0.1
263,288 + -0.1
263,289 - -0.1
263,289 - +0.3
263,575 + GFF2837 0.51 -0.2
263,576 - GFF2837 0.52 -1.4
263,578 + GFF2837 0.52 -0.4
263,578 + GFF2837 0.52 -1.2

Or see this region's nucleotide sequence