Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2819 and GFF2820 are separated by 49 nucleotides GFF2820 and GFF2821 overlap by 4 nucleotides GFF2821 and GFF2822 overlap by 4 nucleotides GFF2822 and GFF2823 overlap by 4 nucleotides
GFF2819 - Phosphoenolpyruvate synthase regulatory protein, at 246,024 to 246,851
GFF2819
GFF2820 - ABC-type hemin transport system, ATPase component, at 246,901 to 247,707
GFF2820
GFF2821 - Hemin ABC transporter, permease protein, at 247,704 to 248,738
GFF2821
GFF2822 - Periplasmic hemin-binding protein, at 248,735 to 249,634
GFF2822
GFF2823 - Hemin transport protein HmuS, at 249,631 to 250,731
GFF2823
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 246.846 kb on + strand at 246.846 kb on + strand at 246.847 kb on - strand at 246.914 kb on + strand at 246.914 kb on + strand at 246.915 kb on - strand at 246.915 kb on - strand at 246.915 kb on - strand at 246.915 kb on - strand at 246.915 kb on - strand at 246.915 kb on - strand at 247.045 kb on + strand, within GFF2820 at 247.045 kb on + strand, within GFF2820 at 247.045 kb on + strand, within GFF2820 at 247.045 kb on + strand, within GFF2820 at 247.046 kb on - strand, within GFF2820 at 247.046 kb on - strand, within GFF2820 at 247.046 kb on - strand, within GFF2820 at 247.046 kb on - strand, within GFF2820 at 247.046 kb on - strand, within GFF2820 at 247.046 kb on - strand, within GFF2820 at 247.046 kb on - strand, within GFF2820 at 247.059 kb on - strand, within GFF2820 at 247.248 kb on + strand, within GFF2820 at 247.249 kb on - strand, within GFF2820 at 247.249 kb on - strand, within GFF2820 at 247.379 kb on + strand, within GFF2820 at 247.380 kb on - strand, within GFF2820 at 247.644 kb on + strand at 247.644 kb on + strand at 247.707 kb on + strand at 247.707 kb on + strand at 247.707 kb on + strand at 247.707 kb on + strand at 247.707 kb on + strand at 247.707 kb on + strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.708 kb on - strand at 247.817 kb on + strand, within GFF2821 at 248.302 kb on + strand, within GFF2821 at 248.302 kb on + strand, within GFF2821 at 248.302 kb on + strand, within GFF2821 at 248.303 kb on - strand, within GFF2821 at 248.303 kb on - strand, within GFF2821 at 248.303 kb on - strand, within GFF2821 at 248.303 kb on - strand, within GFF2821 at 248.647 kb on + strand at 248.647 kb on + strand at 248.647 kb on + strand at 248.647 kb on + strand at 248.647 kb on + strand at 248.647 kb on + strand at 248.647 kb on + strand at 248.648 kb on - strand at 248.648 kb on - strand at 248.648 kb on - strand at 248.648 kb on - strand at 249.019 kb on - strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.382 kb on - strand, within GFF2822 at 249.382 kb on - strand, within GFF2822 at 249.382 kb on - strand, within GFF2822 at 249.382 kb on - strand, within GFF2822 at 249.418 kb on - strand, within GFF2822 at 249.468 kb on + strand, within GFF2822 at 249.468 kb on + strand, within GFF2822 at 249.468 kb on + strand, within GFF2822 at 249.468 kb on + strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.584 kb on + strand at 249.584 kb on + strand at 249.584 kb on + strand at 249.584 kb on + strand at 249.584 kb on + strand at 249.585 kb on - strand at 249.585 kb on - strand at 249.585 kb on - strand at 249.585 kb on - strand at 249.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 246,846 + +0.1 246,846 + +0.2 246,847 - +0.0 246,914 + -0.2 246,914 + -0.3 246,915 - -0.1 246,915 - -0.5 246,915 - +0.2 246,915 - -0.1 246,915 - -0.2 246,915 - -0.7 247,045 + GFF2820 0.18 +0.1 247,045 + GFF2820 0.18 -0.0 247,045 + GFF2820 0.18 +0.6 247,045 + GFF2820 0.18 -0.3 247,046 - GFF2820 0.18 -1.0 247,046 - GFF2820 0.18 -0.0 247,046 - GFF2820 0.18 +0.1 247,046 - GFF2820 0.18 -0.6 247,046 - GFF2820 0.18 +0.0 247,046 - GFF2820 0.18 -0.3 247,046 - GFF2820 0.18 -0.4 247,059 - GFF2820 0.20 -0.4 247,248 + GFF2820 0.43 +0.8 247,249 - GFF2820 0.43 -0.5 247,249 - GFF2820 0.43 +0.1 247,379 + GFF2820 0.59 -0.8 247,380 - GFF2820 0.59 -0.4 247,644 + -0.3 247,644 + -0.6 247,707 + +0.0 247,707 + +0.0 247,707 + +0.6 247,707 + -0.4 247,707 + -0.3 247,707 + -0.4 247,708 - -0.1 247,708 - +0.2 247,708 - -1.1 247,708 - -1.7 247,708 - -0.7 247,708 - -0.7 247,708 - +1.9 247,708 - -0.0 247,708 - +0.3 247,708 - -0.2 247,708 - -2.0 247,708 - -0.4 247,708 - -0.6 247,708 - -0.9 247,817 + GFF2821 0.11 +1.1 248,302 + GFF2821 0.58 +0.1 248,302 + GFF2821 0.58 -0.6 248,302 + GFF2821 0.58 -0.4 248,303 - GFF2821 0.58 +0.5 248,303 - GFF2821 0.58 -0.9 248,303 - GFF2821 0.58 -2.3 248,303 - GFF2821 0.58 -0.7 248,647 + -0.3 248,647 + -0.1 248,647 + +0.5 248,647 + -1.7 248,647 + +0.4 248,647 + -1.0 248,647 + -1.4 248,648 - -0.2 248,648 - -0.5 248,648 - +0.1 248,648 - +1.2 249,019 - GFF2822 0.32 +1.9 249,381 + GFF2822 0.72 +0.1 249,381 + GFF2822 0.72 +0.7 249,381 + GFF2822 0.72 -0.3 249,381 + GFF2822 0.72 -0.5 249,381 + GFF2822 0.72 +0.1 249,381 + GFF2822 0.72 -0.0 249,381 + GFF2822 0.72 -0.1 249,381 + GFF2822 0.72 -1.4 249,381 + GFF2822 0.72 -0.4 249,382 - GFF2822 0.72 -1.3 249,382 - GFF2822 0.72 -0.7 249,382 - GFF2822 0.72 +0.1 249,382 - GFF2822 0.72 -0.4 249,418 - GFF2822 0.76 -0.4 249,468 + GFF2822 0.81 +0.6 249,468 + GFF2822 0.81 -0.8 249,468 + GFF2822 0.81 -0.4 249,468 + GFF2822 0.81 +0.1 249,469 - GFF2822 0.82 -0.2 249,469 - GFF2822 0.82 +0.7 249,469 - GFF2822 0.82 -0.8 249,469 - GFF2822 0.82 +3.7 249,469 - GFF2822 0.82 -0.3 249,469 - GFF2822 0.82 +0.7 249,584 + +0.4 249,584 + -0.6 249,584 + -0.7 249,584 + -0.2 249,584 + +0.2 249,585 - -0.3 249,585 - +0.6 249,585 - -1.5 249,585 - -0.3 249,585 - +0.3
Or see this region's nucleotide sequence