Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2803 and GFF2804 are separated by 176 nucleotides GFF2804 and GFF2805 are separated by 145 nucleotides GFF2805 and GFF2806 are separated by 209 nucleotides
GFF2803 - Alanine transaminase (EC 2.6.1.2), at 232,633 to 233,865
GFF2803
GFF2804 - Membrane protein, at 234,042 to 234,425
GFF2804
GFF2805 - Thiol peroxidase, Bcp-type (EC 1.11.1.15), at 234,571 to 235,047
GFF2805
GFF2806 - Predicted ATPase related to phosphate starvation-inducible protein PhoH, at 235,257 to 237,059
GFF2806
Position (kb) 234
235 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.076 kb on - strand, within GFF2803 at 233.076 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.222 kb on + strand, within GFF2803 at 233.223 kb on - strand, within GFF2803 at 233.237 kb on + strand, within GFF2803 at 233.237 kb on + strand, within GFF2803 at 233.313 kb on - strand, within GFF2803 at 233.313 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.919 kb on + strand at 233.920 kb on - strand at 233.920 kb on - strand at 233.920 kb on - strand at 233.920 kb on - strand at 233.920 kb on - strand at 234.013 kb on - strand at 234.015 kb on - strand at 234.354 kb on + strand, within GFF2804 at 234.354 kb on + strand, within GFF2804 at 234.354 kb on + strand, within GFF2804 at 234.354 kb on + strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.426 kb on + strand at 234.426 kb on + strand at 234.426 kb on + strand at 234.426 kb on + strand at 234.426 kb on + strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.443 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.449 kb on - strand at 234.449 kb on - strand at 234.449 kb on - strand at 234.451 kb on + strand at 234.451 kb on + strand at 234.452 kb on - strand at 234.482 kb on + strand at 234.482 kb on + strand at 234.482 kb on + strand at 234.482 kb on + strand at 234.483 kb on - strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.552 kb on - strand at 235.145 kb on + strand at 235.145 kb on + strand at 235.145 kb on + strand at 235.145 kb on + strand at 235.145 kb on + strand at 235.145 kb on + strand at 235.145 kb on + strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand at 235.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 233,075 + GFF2803 0.36 +0.9 233,075 + GFF2803 0.36 +1.9 233,075 + GFF2803 0.36 +0.1 233,075 + GFF2803 0.36 -0.2 233,075 + GFF2803 0.36 -1.0 233,076 - GFF2803 0.36 -0.3 233,076 - GFF2803 0.36 -0.3 233,142 - GFF2803 0.41 +0.2 233,142 - GFF2803 0.41 +0.9 233,142 - GFF2803 0.41 -0.2 233,222 + GFF2803 0.48 -0.1 233,223 - GFF2803 0.48 -0.8 233,237 + GFF2803 0.49 +0.3 233,237 + GFF2803 0.49 -0.4 233,313 - GFF2803 0.55 -0.4 233,313 - GFF2803 0.55 -0.5 233,430 - GFF2803 0.65 -0.5 233,430 - GFF2803 0.65 -0.7 233,430 - GFF2803 0.65 -1.0 233,571 - GFF2803 0.76 -1.1 233,571 - GFF2803 0.76 +0.1 233,571 - GFF2803 0.76 -0.1 233,571 - GFF2803 0.76 +0.1 233,571 - GFF2803 0.76 -1.1 233,571 - GFF2803 0.76 -2.2 233,823 - -0.1 233,823 - +1.3 233,823 - +0.6 233,823 - -0.6 233,823 - -0.4 233,823 - +0.6 233,919 + +2.9 233,920 - +0.2 233,920 - -0.2 233,920 - -0.7 233,920 - -0.9 233,920 - -1.0 234,013 - +0.0 234,015 - -0.0 234,354 + GFF2804 0.81 -0.5 234,354 + GFF2804 0.81 -0.3 234,354 + GFF2804 0.81 +0.9 234,354 + GFF2804 0.81 +0.3 234,355 - GFF2804 0.82 -0.7 234,355 - GFF2804 0.82 -0.3 234,355 - GFF2804 0.82 -0.4 234,355 - GFF2804 0.82 +0.8 234,355 - GFF2804 0.82 -1.4 234,355 - GFF2804 0.82 -0.9 234,426 + -0.6 234,426 + +1.2 234,426 + -1.5 234,426 + -0.5 234,426 + -0.9 234,427 - -0.2 234,427 - +0.7 234,427 - -0.4 234,427 - +1.1 234,427 - -1.4 234,427 - -0.7 234,443 + -0.5 234,448 + -0.1 234,448 + -1.7 234,448 + -0.4 234,448 + -0.1 234,448 + +0.3 234,449 - +1.9 234,449 - +1.3 234,449 - -0.7 234,451 + +0.4 234,451 + -0.3 234,452 - -0.3 234,482 + -1.0 234,482 + +0.4 234,482 + -0.9 234,482 + +0.7 234,483 - +1.3 234,551 + +1.2 234,551 + -0.4 234,551 + -0.4 234,551 + +0.1 234,551 + +0.6 234,551 + +1.3 234,551 + -0.6 234,551 + +1.2 234,552 - +2.1 235,145 + +0.3 235,145 + +0.5 235,145 + +0.3 235,145 + -0.7 235,145 + -1.3 235,145 + -0.3 235,145 + -0.2 235,146 - +0.3 235,146 - +0.1 235,146 - -2.3 235,146 - -1.3 235,146 - -0.3 235,146 - -0.4 235,146 - -0.6 235,146 - -0.1 235,146 - -1.3 235,146 - -0.5 235,146 - -1.3 235,146 - +0.7 235,146 - +0.3 235,146 - -0.4
Or see this region's nucleotide sequence