Strain Fitness in Variovorax sp. SCN45 around GFF2790

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2788 and GFF2789 are separated by 92 nucleotidesGFF2789 and GFF2790 are separated by 5 nucleotidesGFF2790 and GFF2791 are separated by 116 nucleotidesGFF2791 and GFF2792 are separated by 6 nucleotides GFF2788 - FIG003461: hypothetical protein, at 218,620 to 219,201 GFF2788 GFF2789 - Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29), at 219,294 to 219,701 GFF2789 GFF2790 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 219,707 to 220,891 GFF2790 GFF2791 - hypothetical protein, at 221,008 to 221,343 GFF2791 GFF2792 - Chaperone protein ClpB (ATP-dependent unfoldase), at 221,350 to 223,971 GFF2792 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.735 kb on - strand, within GFF2788at 218.735 kb on - strand, within GFF2788at 218.735 kb on - strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 219.373 kb on + strand, within GFF2789at 219.374 kb on - strand, within GFF2789at 219.374 kb on - strand, within GFF2789at 219.586 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.598 kb on - strand, within GFF2789at 219.598 kb on - strand, within GFF2789at 219.598 kb on - strand, within GFF2789at 219.772 kb on - strandat 219.772 kb on - strandat 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.053 kb on + strand, within GFF2790at 220.054 kb on - strand, within GFF2790at 220.383 kb on + strand, within GFF2790at 220.383 kb on + strand, within GFF2790at 220.383 kb on + strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.495 kb on - strand, within GFF2790at 220.495 kb on - strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.693 kb on - strand, within GFF2790at 220.996 kb on + strandat 220.997 kb on - strandat 220.997 kb on - strandat 221.237 kb on + strand, within GFF2791at 221.238 kb on - strand, within GFF2791at 221.333 kb on - strandat 221.351 kb on + strandat 221.352 kb on - strandat 221.661 kb on + strand, within GFF2792at 221.661 kb on + strand, within GFF2792at 221.662 kb on - strand, within GFF2792at 221.662 kb on - strand, within GFF2792at 221.723 kb on + strand, within GFF2792at 221.723 kb on + strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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218,732 + GFF2788 0.19 +0.3
218,732 + GFF2788 0.19 -1.7
218,732 + GFF2788 0.19 +0.9
218,732 + GFF2788 0.19 +1.1
218,732 + GFF2788 0.19 -0.4
218,732 + GFF2788 0.19 -1.8
218,732 + GFF2788 0.19 -0.2
218,732 + GFF2788 0.19 -0.3
218,732 + GFF2788 0.19 +0.4
218,732 + GFF2788 0.19 +0.2
218,732 + GFF2788 0.19 -0.7
218,733 - GFF2788 0.19 -0.5
218,733 - GFF2788 0.19 +0.6
218,733 - GFF2788 0.19 -0.3
218,733 - GFF2788 0.19 +0.2
218,733 - GFF2788 0.19 -1.2
218,733 - GFF2788 0.19 -0.2
218,733 - GFF2788 0.19 +0.9
218,733 - GFF2788 0.19 +0.9
218,733 - GFF2788 0.19 -0.9
218,733 - GFF2788 0.19 -1.4
218,733 - GFF2788 0.19 -0.4
218,733 - GFF2788 0.19 -0.2
218,733 - GFF2788 0.19 +1.5
218,733 - GFF2788 0.19 +0.3
218,733 - GFF2788 0.19 -0.5
218,733 - GFF2788 0.19 +0.2
218,734 + GFF2788 0.20 -0.3
218,734 + GFF2788 0.20 -0.3
218,734 + GFF2788 0.20 +0.0
218,734 + GFF2788 0.20 +0.9
218,735 - GFF2788 0.20 +1.5
218,735 - GFF2788 0.20 -0.6
218,735 - GFF2788 0.20 -0.4
218,834 + GFF2788 0.37 -0.8
218,834 + GFF2788 0.37 -0.2
218,834 + GFF2788 0.37 -0.2
218,834 + GFF2788 0.37 +0.3
218,834 + GFF2788 0.37 -0.9
218,835 - GFF2788 0.37 -0.4
218,835 - GFF2788 0.37 -0.6
218,835 - GFF2788 0.37 +0.1
218,835 - GFF2788 0.37 -1.1
219,373 + GFF2789 0.19 -1.1
219,374 - GFF2789 0.20 +0.0
219,374 - GFF2789 0.20 -0.6
219,586 + GFF2789 0.72 -0.3
219,597 + GFF2789 0.74 -1.1
219,597 + GFF2789 0.74 -0.7
219,597 + GFF2789 0.74 -0.1
219,597 + GFF2789 0.74 -0.5
219,598 - GFF2789 0.75 +1.1
219,598 - GFF2789 0.75 -0.8
219,598 - GFF2789 0.75 -0.1
219,772 - -0.7
219,772 - -1.4
220,026 + GFF2790 0.27 -0.3
220,026 + GFF2790 0.27 -0.9
220,026 + GFF2790 0.27 -0.3
220,026 + GFF2790 0.27 -0.3
220,026 + GFF2790 0.27 -0.6
220,026 + GFF2790 0.27 -0.4
220,026 + GFF2790 0.27 -0.8
220,026 + GFF2790 0.27 -0.5
220,026 + GFF2790 0.27 -0.6
220,027 - GFF2790 0.27 -1.5
220,027 - GFF2790 0.27 -0.4
220,027 - GFF2790 0.27 -0.5
220,027 - GFF2790 0.27 -0.9
220,027 - GFF2790 0.27 +0.6
220,027 - GFF2790 0.27 -0.9
220,027 - GFF2790 0.27 -0.1
220,027 - GFF2790 0.27 +0.2
220,027 - GFF2790 0.27 -0.4
220,027 - GFF2790 0.27 -0.3
220,027 - GFF2790 0.27 -0.0
220,027 - GFF2790 0.27 +0.7
220,027 - GFF2790 0.27 +0.5
220,027 - GFF2790 0.27 +0.2
220,027 - GFF2790 0.27 -1.5
220,027 - GFF2790 0.27 -0.3
220,053 + GFF2790 0.29 -1.3
220,054 - GFF2790 0.29 -0.3
220,383 + GFF2790 0.57 -0.4
220,383 + GFF2790 0.57 -1.9
220,383 + GFF2790 0.57 +0.6
220,384 - GFF2790 0.57 -0.6
220,384 - GFF2790 0.57 +0.3
220,384 - GFF2790 0.57 +0.3
220,458 + GFF2790 0.63 -0.7
220,458 + GFF2790 0.63 -0.9
220,458 + GFF2790 0.63 -0.4
220,458 + GFF2790 0.63 -0.5
220,459 - GFF2790 0.63 +0.7
220,459 - GFF2790 0.63 -0.5
220,459 - GFF2790 0.63 +0.9
220,459 - GFF2790 0.63 -0.5
220,459 - GFF2790 0.63 +0.1
220,495 - GFF2790 0.66 -0.6
220,495 - GFF2790 0.66 -0.6
220,515 + GFF2790 0.68 -0.8
220,515 + GFF2790 0.68 -0.5
220,515 + GFF2790 0.68 -0.5
220,692 + GFF2790 0.83 -0.0
220,692 + GFF2790 0.83 -1.1
220,692 + GFF2790 0.83 +0.9
220,693 - GFF2790 0.83 -1.2
220,996 + +0.8
220,997 - -0.2
220,997 - -0.2
221,237 + GFF2791 0.68 +0.7
221,238 - GFF2791 0.68 -0.6
221,333 - -0.4
221,351 + -1.1
221,352 - +0.2
221,661 + GFF2792 0.12 -0.1
221,661 + GFF2792 0.12 -0.7
221,662 - GFF2792 0.12 -0.3
221,662 - GFF2792 0.12 -1.9
221,723 + GFF2792 0.14 -0.8
221,723 + GFF2792 0.14 -1.2
221,724 - GFF2792 0.14 +0.1
221,724 - GFF2792 0.14 -0.4
221,724 - GFF2792 0.14 +0.2
221,724 - GFF2792 0.14 -0.3
221,724 - GFF2792 0.14 +0.2

Or see this region's nucleotide sequence