Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2701 and GFF2702 overlap by 4 nucleotides GFF2702 and GFF2703 are separated by 65 nucleotides GFF2703 and GFF2704 are separated by 10 nucleotides
GFF2701 - CaiB/BaiF family protein, at 128,391 to 129,560
GFF2701
GFF2702 - FAD-dependent oxidoreductase, at 129,557 to 130,939
GFF2702
GFF2703 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 131,005 to 131,868
GFF2703
GFF2704 - Hydroxymethylpyrimidine ABC transporter, ATP-binding protein, at 131,879 to 132,673
GFF2704
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1 at 128.741 kb on - strand, within GFF2701 at 129.184 kb on + strand, within GFF2701 at 129.184 kb on + strand, within GFF2701 at 129.184 kb on + strand, within GFF2701 at 129.856 kb on - strand, within GFF2702 at 129.858 kb on + strand, within GFF2702 at 129.859 kb on - strand, within GFF2702 at 129.859 kb on - strand, within GFF2702 at 129.862 kb on - strand, within GFF2702 at 129.862 kb on - strand, within GFF2702 at 129.930 kb on + strand, within GFF2702 at 130.296 kb on + strand, within GFF2702 at 130.297 kb on - strand, within GFF2702 at 130.297 kb on - strand, within GFF2702 at 130.297 kb on - strand, within GFF2702 at 130.578 kb on + strand, within GFF2702 at 130.578 kb on + strand, within GFF2702 at 130.579 kb on - strand, within GFF2702 at 130.579 kb on - strand, within GFF2702 at 130.785 kb on + strand, within GFF2702 at 130.786 kb on - strand, within GFF2702 at 130.930 kb on + strand at 130.940 kb on - strand at 131.627 kb on + strand, within GFF2703
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 128,741 - GFF2701 0.30 -1.7 129,184 + GFF2701 0.68 -0.6 129,184 + GFF2701 0.68 +0.1 129,184 + GFF2701 0.68 -0.8 129,856 - GFF2702 0.22 +0.4 129,858 + GFF2702 0.22 -0.4 129,859 - GFF2702 0.22 +1.4 129,859 - GFF2702 0.22 -0.4 129,862 - GFF2702 0.22 -0.8 129,862 - GFF2702 0.22 +0.1 129,930 + GFF2702 0.27 -2.1 130,296 + GFF2702 0.53 -0.1 130,297 - GFF2702 0.54 +0.2 130,297 - GFF2702 0.54 +0.5 130,297 - GFF2702 0.54 +1.3 130,578 + GFF2702 0.74 -1.6 130,578 + GFF2702 0.74 +0.4 130,579 - GFF2702 0.74 +0.6 130,579 - GFF2702 0.74 +0.4 130,785 + GFF2702 0.89 +0.5 130,786 - GFF2702 0.89 +0.3 130,930 + -0.9 130,940 - -0.0 131,627 + GFF2703 0.72 -0.2
Or see this region's nucleotide sequence