Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2699 and GFF2700 are separated by 28 nucleotides GFF2700 and GFF2701 overlap by 4 nucleotides GFF2701 and GFF2702 overlap by 4 nucleotides
GFF2699 - 4Fe-4S ferredoxin, iron-sulfur binding, at 127,254 to 127,589
GFF2699
GFF2700 - Enoyl-CoA hydratase (EC 4.2.1.17), at 127,618 to 128,394
GFF2700
GFF2701 - CaiB/BaiF family protein, at 128,391 to 129,560
GFF2701
GFF2702 - FAD-dependent oxidoreductase, at 129,557 to 130,939
GFF2702
Position (kb) 128
129
130 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 127.423 kb on + strand, within GFF2699 at 127.489 kb on + strand, within GFF2699 at 127.511 kb on - strand, within GFF2699 at 127.511 kb on - strand, within GFF2699 at 127.597 kb on - strand at 127.620 kb on - strand at 128.741 kb on - strand, within GFF2701 at 129.184 kb on + strand, within GFF2701 at 129.184 kb on + strand, within GFF2701 at 129.184 kb on + strand, within GFF2701 at 129.856 kb on - strand, within GFF2702 at 129.858 kb on + strand, within GFF2702 at 129.859 kb on - strand, within GFF2702 at 129.859 kb on - strand, within GFF2702 at 129.862 kb on - strand, within GFF2702 at 129.862 kb on - strand, within GFF2702 at 129.930 kb on + strand, within GFF2702 at 130.296 kb on + strand, within GFF2702 at 130.297 kb on - strand, within GFF2702 at 130.297 kb on - strand, within GFF2702 at 130.297 kb on - strand, within GFF2702
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 127,423 + GFF2699 0.50 -1.4 127,489 + GFF2699 0.70 +1.5 127,511 - GFF2699 0.76 -1.0 127,511 - GFF2699 0.76 +3.9 127,597 - -0.4 127,620 - -0.7 128,741 - GFF2701 0.30 -1.7 129,184 + GFF2701 0.68 -0.6 129,184 + GFF2701 0.68 +0.1 129,184 + GFF2701 0.68 -0.8 129,856 - GFF2702 0.22 +0.4 129,858 + GFF2702 0.22 -0.4 129,859 - GFF2702 0.22 +1.4 129,859 - GFF2702 0.22 -0.4 129,862 - GFF2702 0.22 -0.8 129,862 - GFF2702 0.22 +0.1 129,930 + GFF2702 0.27 -2.1 130,296 + GFF2702 0.53 -0.1 130,297 - GFF2702 0.54 +0.2 130,297 - GFF2702 0.54 +0.5 130,297 - GFF2702 0.54 +1.3
Or see this region's nucleotide sequence