Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2689 and GFF2690 overlap by 4 nucleotides GFF2690 and GFF2691 are separated by 89 nucleotides GFF2691 and GFF2692 overlap by 4 nucleotides GFF2692 and GFF2693 overlap by 29 nucleotides
GFF2689 - Protein containing transglutaminase-like domain, putative cysteine protease, at 118,759 to 119,715
GFF2689
GFF2690 - RidA/YER057c/UK114 superfamily, group 1, at 119,712 to 120,170
GFF2690
GFF2691 - no description, at 120,260 to 120,934
GFF2691
GFF2692 - hypothetical protein, at 120,931 to 121,506
GFF2692
GFF2693 - no description, at 121,478 to 122,485
GFF2693
Position (kb) 120
121 Strain fitness (log2 ratio) -1
0
1
2 at 119.272 kb on - strand, within GFF2689 at 119.371 kb on + strand, within GFF2689 at 119.536 kb on + strand, within GFF2689 at 119.537 kb on - strand, within GFF2689 at 119.537 kb on - strand, within GFF2689 at 119.537 kb on - strand, within GFF2689 at 119.564 kb on - strand, within GFF2689 at 119.591 kb on + strand, within GFF2689 at 119.592 kb on - strand, within GFF2689 at 119.782 kb on - strand, within GFF2690 at 119.851 kb on + strand, within GFF2690 at 120.217 kb on + strand at 120.217 kb on + strand at 120.218 kb on - strand at 120.360 kb on + strand, within GFF2691 at 120.361 kb on - strand, within GFF2691 at 120.361 kb on - strand, within GFF2691 at 120.749 kb on + strand, within GFF2691 at 120.749 kb on + strand, within GFF2691 at 120.750 kb on - strand, within GFF2691 at 120.782 kb on + strand, within GFF2691 at 120.867 kb on - strand at 120.875 kb on + strand at 120.875 kb on + strand at 120.876 kb on - strand at 121.115 kb on - strand, within GFF2692 at 121.237 kb on + strand, within GFF2692 at 121.301 kb on - strand, within GFF2692 at 121.351 kb on + strand, within GFF2692 at 121.636 kb on - strand, within GFF2693 at 121.636 kb on - strand, within GFF2693 at 121.665 kb on + strand, within GFF2693 at 121.665 kb on + strand, within GFF2693 at 121.734 kb on + strand, within GFF2693 at 121.734 kb on + strand, within GFF2693 at 121.734 kb on + strand, within GFF2693 at 121.735 kb on - strand, within GFF2693 at 121.735 kb on - strand, within GFF2693 at 121.896 kb on + strand, within GFF2693 at 121.897 kb on - strand, within GFF2693
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 119,272 - GFF2689 0.54 +1.0 119,371 + GFF2689 0.64 +0.9 119,536 + GFF2689 0.81 +0.2 119,537 - GFF2689 0.81 -1.1 119,537 - GFF2689 0.81 +0.6 119,537 - GFF2689 0.81 -0.6 119,564 - GFF2689 0.84 -0.2 119,591 + GFF2689 0.87 -0.1 119,592 - GFF2689 0.87 +0.2 119,782 - GFF2690 0.15 -0.6 119,851 + GFF2690 0.30 -0.4 120,217 + -0.2 120,217 + +0.6 120,218 - +0.3 120,360 + GFF2691 0.15 -1.2 120,361 - GFF2691 0.15 -0.9 120,361 - GFF2691 0.15 +0.4 120,749 + GFF2691 0.72 +0.1 120,749 + GFF2691 0.72 -0.7 120,750 - GFF2691 0.73 -1.3 120,782 + GFF2691 0.77 +0.2 120,867 - -0.4 120,875 + +2.5 120,875 + -0.1 120,876 - -0.1 121,115 - GFF2692 0.32 -0.1 121,237 + GFF2692 0.53 -0.2 121,301 - GFF2692 0.64 +0.4 121,351 + GFF2692 0.73 -0.6 121,636 - GFF2693 0.16 -0.1 121,636 - GFF2693 0.16 +0.3 121,665 + GFF2693 0.19 +0.3 121,665 + GFF2693 0.19 -0.5 121,734 + GFF2693 0.25 -0.4 121,734 + GFF2693 0.25 +0.3 121,734 + GFF2693 0.25 -0.5 121,735 - GFF2693 0.25 +0.3 121,735 - GFF2693 0.25 -0.5 121,896 + GFF2693 0.41 -0.6 121,897 - GFF2693 0.42 +1.0
Or see this region's nucleotide sequence