Strain Fitness in Variovorax sp. SCN45 around GFF2683

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
105,355	+				-0.2
105,355	+				+0.3
105,356	-				+0.1
105,356	-				-0.4
105,356	-				+1.1
105,356	-				+0.4
105,356	-				+0.5
105,356	-				-0.6
105,356	-				-1.7
105,397	+		GFF2682	0.12	+0.2
105,583	+		GFF2682	0.32	+0.2
105,628	+		GFF2682	0.36	-0.2
105,628	+		GFF2682	0.36	-0.7
105,628	+		GFF2682	0.36	+0.1
105,628	+		GFF2682	0.36	+0.4
105,629	-		GFF2682	0.37	-0.4
105,637	+		GFF2682	0.37	-0.9
105,638	-		GFF2682	0.38	+0.9
105,740	+		GFF2682	0.48	-0.8
105,740	+		GFF2682	0.48	-0.5
105,757	+		GFF2682	0.50	-0.3
105,757	+		GFF2682	0.50	-2.0
105,758	-		GFF2682	0.50	+0.9
105,758	-		GFF2682	0.50	-0.3
106,049	-		GFF2682	0.80	-0.2
106,060	+		GFF2682	0.82	-0.1
106,061	-		GFF2682	0.82	-0.1
106,061	-		GFF2682	0.82	+1.4
106,061	-		GFF2682	0.82	+0.3
106,105	+		GFF2682	0.86	+1.9
106,106	-		GFF2682	0.86	+1.9
106,106	-		GFF2682	0.86	+0.6
106,106	-		GFF2682	0.86	+0.4
106,147	+				+1.3
106,192	+				-0.3
106,192	+				-0.8
106,193	-				-0.9
106,207	+				-0.6
106,207	+				-0.1
106,208	-				-0.1
106,208	-				-0.7
106,208	-				-0.7
106,208	-				+0.1
106,208	-				+0.3
106,208	-				-0.0
106,223	+				+0.5
106,223	+				-0.1
106,223	+				+0.5
106,520	+		GFF2683	0.18	-0.9
106,520	+		GFF2683	0.18	+0.3
106,520	+		GFF2683	0.18	-0.9
106,520	+		GFF2683	0.18	+1.5
106,520	+		GFF2683	0.18	+0.6
106,520	+		GFF2683	0.18	-1.1
106,521	-		GFF2683	0.18	-0.4
106,521	-		GFF2683	0.18	-0.5
106,521	-		GFF2683	0.18	+0.1
106,521	-		GFF2683	0.18	-1.1
106,521	-		GFF2683	0.18	-0.4
106,658	+		GFF2683	0.27	+0.0
106,658	+		GFF2683	0.27	-0.6
106,658	+		GFF2683	0.27	-0.3
106,658	+		GFF2683	0.27	+0.3
106,659	-		GFF2683	0.27	+2.9
106,688	+		GFF2683	0.29	-0.7
106,688	+		GFF2683	0.29	+0.4
106,688	+		GFF2683	0.29	+1.2
106,688	+		GFF2683	0.29	+0.6
106,688	+		GFF2683	0.29	-0.4
106,688	+		GFF2683	0.29	+0.1
106,688	+		GFF2683	0.29	+0.0
106,688	+		GFF2683	0.29	-0.2
106,688	+		GFF2683	0.29	-1.1
106,688	+		GFF2683	0.29	+0.5
106,689	-		GFF2683	0.29	-1.1
106,689	-		GFF2683	0.29	-0.9
106,689	-		GFF2683	0.29	+0.9
106,689	-		GFF2683	0.29	+0.8
106,689	-		GFF2683	0.29	-0.0
106,727	+		GFF2683	0.32	+2.9
106,727	+		GFF2683	0.32	+1.4
106,728	-		GFF2683	0.32	+2.9
106,728	-		GFF2683	0.32	+0.3
106,751	+		GFF2683	0.33	+0.1
106,751	+		GFF2683	0.33	-0.0
106,751	+		GFF2683	0.33	+0.8
106,751	+		GFF2683	0.33	+0.1
106,752	-		GFF2683	0.34	-1.3
106,752	-		GFF2683	0.34	+0.1
106,752	-		GFF2683	0.34	-0.2
106,757	+		GFF2683	0.34	+0.1
106,757	+		GFF2683	0.34	-2.4
106,758	-		GFF2683	0.34	+0.3
106,758	-		GFF2683	0.34	-1.5
106,908	-		GFF2683	0.44	+0.3
106,908	-		GFF2683	0.44	-1.1
106,908	-		GFF2683	0.44	-0.6
106,949	+		GFF2683	0.47	+0.1
106,949	+		GFF2683	0.47	-0.9
106,949	+		GFF2683	0.47	+0.5
106,950	-		GFF2683	0.47	-0.8
106,950	-		GFF2683	0.47	+0.3
106,950	-		GFF2683	0.47	+0.5
106,950	-		GFF2683	0.47	+0.2
106,950	-		GFF2683	0.47	-0.0
106,950	-		GFF2683	0.47	+0.4
107,034	-		GFF2683	0.52	-0.5
107,045	+		GFF2683	0.53	+1.3
107,045	+		GFF2683	0.53	+0.4
107,045	+		GFF2683	0.53	-0.8
107,045	+		GFF2683	0.53	-0.3
107,045	+		GFF2683	0.53	-1.1
107,045	+		GFF2683	0.53	+0.9
107,045	+		GFF2683	0.53	+0.3
107,045	+		GFF2683	0.53	+0.9
107,045	+		GFF2683	0.53	-0.6
107,046	-		GFF2683	0.53	+0.5
107,046	-		GFF2683	0.53	+1.1
107,046	-		GFF2683	0.53	-1.0
107,046	-		GFF2683	0.53	-0.1
107,046	-		GFF2683	0.53	-0.4
107,213	+		GFF2683	0.64	-1.8
107,213	+		GFF2683	0.64	+0.2
107,213	+		GFF2683	0.64	+0.2
107,213	+		GFF2683	0.64	-0.4
107,213	+		GFF2683	0.64	+0.1
107,213	+		GFF2683	0.64	-1.1
107,213	+		GFF2683	0.64	-0.1
107,214	-		GFF2683	0.64	+0.2
107,214	-		GFF2683	0.64	-0.5
107,214	-		GFF2683	0.64	-1.3
107,255	+		GFF2683	0.67	+0.3
107,255	+		GFF2683	0.67	-0.2
107,255	+		GFF2683	0.67	-0.3
107,255	+		GFF2683	0.67	-0.4
107,255	+		GFF2683	0.67	-0.4
107,255	+		GFF2683	0.67	+0.1
107,256	-		GFF2683	0.67	+0.5
107,256	-		GFF2683	0.67	+0.6
107,256	-		GFF2683	0.67	+1.8
107,256	-		GFF2683	0.67	+0.4
107,256	-		GFF2683	0.67	-0.4
107,256	-		GFF2683	0.67	-0.4
107,258	+		GFF2683	0.67	+0.1
107,258	+		GFF2683	0.67	-0.9
107,259	-		GFF2683	0.67	+0.4
107,259	-		GFF2683	0.67	-0.4
107,259	-		GFF2683	0.67	+0.1
107,318	+		GFF2683	0.71	-1.3
107,319	-		GFF2683	0.71	-0.7
107,319	-		GFF2683	0.71	-0.2
107,319	-		GFF2683	0.71	-0.6
107,319	-		GFF2683	0.71	+0.2
107,427	-		GFF2683	0.79	-0.5
107,427	-		GFF2683	0.79	-0.1
107,576	+		GFF2683	0.88	-0.9
107,593	-		GFF2683	0.90	-0.9
107,684	+				+0.5
107,684	+				+0.9
107,684	+				-0.1
107,684	+				+1.0
107,684	+				+0.1
107,684	+				-0.0
107,684	+				-0.1
107,684	+				+0.0
107,684	+				-0.4
107,684	+				+0.3
107,684	+				+0.2
107,684	+				+0.5
107,684	+				+0.6
107,684	+				-0.5
107,685	-				+1.2
107,685	-				+0.6
107,685	-				-0.2
107,685	-				-0.2
107,685	-				-0.6
107,685	-				-0.2
107,726	+				+0.3
107,726	+				-0.6
107,726	+				+0.3
107,726	+				+0.1
107,726	+				-0.1
107,726	+				+0.0
107,726	+				-0.9
107,726	+				+0.9
107,726	+				-0.2
107,726	+				-0.0
107,726	+				+0.9
107,726	+				-0.1
107,727	-				+1.6
107,727	-				+0.5
107,773	+				+0.1
107,773	+				-0.5
107,773	+				-0.1
107,774	-				-0.7
107,774	-				+0.9
107,774	-				-0.9
107,774	-				-1.2
107,778	+				-0.9
107,778	+				+0.8
107,779	-				+0.9
107,796	+				+1.5
107,796	+				-0.4
107,797	-				-0.0
107,797	-				+0.3
107,797	-				-0.2
107,806	+				-0.4
107,807	-				+0.6
107,849	+				-0.1
107,850	-				+0.4
107,850	-				+0.3
107,933	+				-1.0
107,933	+				-0.2
107,934	-				+0.4
108,245	+		GFF2684	0.41	-2.0
108,245	+		GFF2684	0.41	-0.8
108,245	+		GFF2684	0.41	+0.3
108,245	+		GFF2684	0.41	+0.3
108,246	-		GFF2684	0.41	-0.5
108,246	-		GFF2684	0.41	-0.5
108,246	-		GFF2684	0.41	+0.1
108,246	-		GFF2684	0.41	-0.4
108,252	+		GFF2684	0.42	+1.2
108,252	+		GFF2684	0.42	-0.5
108,252	+		GFF2684	0.42	+1.3
108,252	+		GFF2684	0.42	-0.5
108,253	-		GFF2684	0.42	-0.0
108,253	-		GFF2684	0.42	+0.9
108,253	-		GFF2684	0.42	+0.3
108,253	-		GFF2684	0.42	+0.7
108,554	+		GFF2684	0.73	+0.5