Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2672 and GFF2673 overlap by 1 nucleotides GFF2673 and GFF2674 overlap by 4 nucleotides GFF2674 and GFF2675 are separated by 2 nucleotides
GFF2672 - ABC transporter, ATP-binding protein, at 94,303 to 95,211
GFF2672
GFF2673 - FIG00655207: hypothetical protein, at 95,211 to 96,191
GFF2673
GFF2674 - FIG00653968: hypothetical protein, at 96,188 to 96,583
GFF2674
GFF2675 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 96,586 to 97,722
GFF2675
Position (kb) 96
97 Strain fitness (log2 ratio) -1
0
1
2
3 at 95.441 kb on - strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.681 kb on - strand, within GFF2673 at 95.681 kb on - strand, within GFF2673 at 95.785 kb on + strand, within GFF2673 at 95.785 kb on + strand, within GFF2673 at 95.807 kb on - strand, within GFF2673 at 95.807 kb on - strand, within GFF2673 at 95.857 kb on + strand, within GFF2673 at 95.869 kb on + strand, within GFF2673 at 95.869 kb on + strand, within GFF2673 at 96.064 kb on + strand, within GFF2673 at 96.064 kb on + strand, within GFF2673 at 96.357 kb on + strand, within GFF2674 at 96.357 kb on + strand, within GFF2674 at 96.357 kb on + strand, within GFF2674 at 96.357 kb on + strand, within GFF2674 at 96.357 kb on + strand, within GFF2674 at 96.358 kb on - strand, within GFF2674 at 96.358 kb on - strand, within GFF2674 at 96.366 kb on + strand, within GFF2674 at 96.519 kb on + strand, within GFF2674 at 96.519 kb on + strand, within GFF2674 at 96.519 kb on + strand, within GFF2674 at 96.520 kb on - strand, within GFF2674 at 96.587 kb on + strand at 96.588 kb on - strand at 96.588 kb on - strand at 96.602 kb on + strand at 96.602 kb on + strand at 96.602 kb on + strand at 96.602 kb on + strand at 96.602 kb on + strand at 96.602 kb on + strand at 96.603 kb on - strand at 96.603 kb on - strand at 96.603 kb on - strand at 96.603 kb on - strand at 96.603 kb on - strand at 96.704 kb on + strand, within GFF2675 at 96.705 kb on - strand, within GFF2675 at 96.705 kb on - strand, within GFF2675 at 96.705 kb on - strand, within GFF2675 at 96.705 kb on - strand, within GFF2675 at 96.705 kb on - strand, within GFF2675 at 96.815 kb on + strand, within GFF2675 at 96.815 kb on + strand, within GFF2675 at 96.907 kb on - strand, within GFF2675 at 96.907 kb on - strand, within GFF2675 at 96.907 kb on - strand, within GFF2675 at 97.040 kb on + strand, within GFF2675 at 97.040 kb on + strand, within GFF2675 at 97.041 kb on - strand, within GFF2675 at 97.566 kb on - strand, within GFF2675 at 97.566 kb on - strand, within GFF2675
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 95,441 - GFF2673 0.23 -0.7 95,680 + GFF2673 0.48 -0.2 95,680 + GFF2673 0.48 +0.0 95,680 + GFF2673 0.48 -0.7 95,680 + GFF2673 0.48 -0.9 95,680 + GFF2673 0.48 +0.2 95,680 + GFF2673 0.48 -0.0 95,680 + GFF2673 0.48 +0.8 95,680 + GFF2673 0.48 -0.0 95,680 + GFF2673 0.48 +0.2 95,681 - GFF2673 0.48 +1.9 95,681 - GFF2673 0.48 -0.4 95,785 + GFF2673 0.59 +1.5 95,785 + GFF2673 0.59 +0.9 95,807 - GFF2673 0.61 -0.7 95,807 - GFF2673 0.61 -0.3 95,857 + GFF2673 0.66 +0.4 95,869 + GFF2673 0.67 -1.5 95,869 + GFF2673 0.67 +0.6 96,064 + GFF2673 0.87 +1.2 96,064 + GFF2673 0.87 -0.1 96,357 + GFF2674 0.43 +0.3 96,357 + GFF2674 0.43 +1.1 96,357 + GFF2674 0.43 +1.1 96,357 + GFF2674 0.43 +0.5 96,357 + GFF2674 0.43 -0.5 96,358 - GFF2674 0.43 +0.1 96,358 - GFF2674 0.43 +0.3 96,366 + GFF2674 0.45 -0.6 96,519 + GFF2674 0.84 -0.3 96,519 + GFF2674 0.84 +0.0 96,519 + GFF2674 0.84 -0.2 96,520 - GFF2674 0.84 -0.4 96,587 + -0.1 96,588 - -0.1 96,588 - +0.5 96,602 + +0.6 96,602 + -0.6 96,602 + -0.4 96,602 + -0.8 96,602 + +0.3 96,602 + +1.0 96,603 - -0.1 96,603 - +0.3 96,603 - -1.0 96,603 - -0.1 96,603 - +0.4 96,704 + GFF2675 0.10 +2.8 96,705 - GFF2675 0.10 -0.7 96,705 - GFF2675 0.10 -0.2 96,705 - GFF2675 0.10 -0.0 96,705 - GFF2675 0.10 -0.3 96,705 - GFF2675 0.10 -0.7 96,815 + GFF2675 0.20 -0.1 96,815 + GFF2675 0.20 -0.4 96,907 - GFF2675 0.28 +0.7 96,907 - GFF2675 0.28 -0.3 96,907 - GFF2675 0.28 +0.1 97,040 + GFF2675 0.40 +0.7 97,040 + GFF2675 0.40 +0.3 97,041 - GFF2675 0.40 -0.2 97,566 - GFF2675 0.86 +0.3 97,566 - GFF2675 0.86 -0.3
Or see this region's nucleotide sequence