Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2525 and GFF2526 are separated by 112 nucleotides GFF2526 and GFF2527 are separated by 7 nucleotides GFF2527 and GFF2528 overlap by 1 nucleotides GFF2528 and GFF2529 overlap by 1 nucleotides GFF2529 and GFF2530 are separated by 82 nucleotides
GFF2525 - Glutamyl-tRNA reductase (EC 1.2.1.70), at 585,597 to 586,868
GFF2525
GFF2526 - no description, at 586,981 to 587,259
GFF2526
GFF2527 - GCN5-related N-acetyltransferase, at 587,267 to 587,794
GFF2527
GFF2528 - ABC transporter, ATP-binding protein PA3838, at 587,794 to 588,588
GFF2528
GFF2529 - ABC transporter, permease protein PA3837, at 588,588 to 589,484
GFF2529
GFF2530 - ABC transporter, substrate-binding protein PA3836, at 589,567 to 590,511
GFF2530
Position (kb) 587
588
589 Strain fitness (log2 ratio) -2
-1
0
1
2 at 586.878 kb on + strand at 586.879 kb on - strand at 586.880 kb on + strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.928 kb on + strand at 586.928 kb on + strand at 586.928 kb on + strand at 586.928 kb on + strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 587.068 kb on + strand, within GFF2526 at 587.068 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.313 kb on + strand at 587.313 kb on + strand at 587.313 kb on + strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.521 kb on - strand, within GFF2527 at 587.521 kb on - strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.706 kb on + strand, within GFF2527 at 587.707 kb on - strand, within GFF2527 at 587.707 kb on - strand, within GFF2527 at 587.945 kb on + strand, within GFF2528 at 587.946 kb on - strand, within GFF2528 at 587.946 kb on - strand, within GFF2528 at 588.628 kb on + strand at 588.628 kb on + strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.739 kb on + strand, within GFF2529 at 588.739 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.440 kb on + strand at 589.441 kb on - strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.569 kb on - strand at 589.569 kb on - strand at 589.569 kb on - strand at 589.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 586,878 + -0.8 586,879 - -0.8 586,880 + +0.7 586,881 - -0.3 586,881 - -0.8 586,881 - -0.5 586,881 - -0.3 586,928 + +0.2 586,928 + -0.4 586,928 + +0.0 586,928 + +1.6 586,929 - -0.4 586,929 - -0.4 586,929 - -1.7 586,929 - -0.7 586,929 - -0.7 586,929 - -1.8 586,939 + -0.5 586,939 + -0.2 586,939 + -0.1 586,939 + -0.1 586,939 + -0.1 586,940 - +0.2 586,940 - -0.4 586,940 - -0.7 586,940 - -0.7 586,940 - +0.4 586,940 - +0.4 586,940 - +0.3 586,940 - -0.4 586,940 - +0.3 586,940 - -0.1 586,940 - +0.7 586,940 - +0.6 587,068 + GFF2526 0.31 +0.1 587,068 + GFF2526 0.31 -0.4 587,194 + GFF2526 0.76 -1.4 587,194 + GFF2526 0.76 +1.0 587,194 + GFF2526 0.76 +0.2 587,194 + GFF2526 0.76 +0.9 587,194 + GFF2526 0.76 +0.3 587,195 - GFF2526 0.77 -0.6 587,195 - GFF2526 0.77 +1.1 587,195 - GFF2526 0.77 -1.4 587,195 - GFF2526 0.77 +0.0 587,195 - GFF2526 0.77 +0.3 587,295 + +0.0 587,295 + +0.7 587,295 + +0.1 587,295 + -0.9 587,295 + -0.5 587,295 + +0.2 587,295 + +0.6 587,295 + -0.0 587,295 + +0.1 587,295 + -0.9 587,295 + +0.2 587,295 + +0.6 587,295 + +0.4 587,295 + +0.2 587,296 - +0.2 587,296 - +0.5 587,296 - +0.9 587,296 - +1.6 587,296 - +0.1 587,296 - -2.1 587,296 - -0.3 587,296 - +0.5 587,296 - -0.6 587,296 - -0.6 587,296 - -0.7 587,313 + +0.3 587,313 + -0.3 587,313 + +0.6 587,314 - -0.2 587,314 - -0.2 587,314 - +0.7 587,314 - -1.7 587,314 - -0.4 587,364 + GFF2527 0.18 -0.6 587,364 + GFF2527 0.18 -0.3 587,364 + GFF2527 0.18 -0.5 587,364 + GFF2527 0.18 -0.7 587,364 + GFF2527 0.18 -0.3 587,365 - GFF2527 0.19 +0.1 587,365 - GFF2527 0.19 +0.3 587,365 - GFF2527 0.19 -0.7 587,365 - GFF2527 0.19 -0.1 587,365 - GFF2527 0.19 +0.0 587,520 + GFF2527 0.48 -0.1 587,520 + GFF2527 0.48 -1.2 587,520 + GFF2527 0.48 -0.4 587,520 + GFF2527 0.48 -0.7 587,520 + GFF2527 0.48 +1.3 587,521 - GFF2527 0.48 -0.5 587,521 - GFF2527 0.48 -0.7 587,604 + GFF2527 0.64 +0.3 587,604 + GFF2527 0.64 +0.2 587,604 + GFF2527 0.64 -0.2 587,604 + GFF2527 0.64 -0.4 587,604 + GFF2527 0.64 -0.3 587,604 + GFF2527 0.64 -0.2 587,604 + GFF2527 0.64 -0.8 587,605 - GFF2527 0.64 -0.1 587,605 - GFF2527 0.64 +0.6 587,605 - GFF2527 0.64 +0.0 587,706 + GFF2527 0.83 -1.4 587,707 - GFF2527 0.83 -1.2 587,707 - GFF2527 0.83 -0.3 587,945 + GFF2528 0.19 -0.6 587,946 - GFF2528 0.19 -1.4 587,946 - GFF2528 0.19 -0.3 588,628 + -0.9 588,628 + -0.3 588,629 - +0.0 588,629 - -0.5 588,629 - +0.9 588,629 - -0.3 588,739 + GFF2529 0.17 -0.6 588,739 + GFF2529 0.17 -0.7 589,189 + GFF2529 0.67 +0.8 589,189 + GFF2529 0.67 -0.3 589,189 + GFF2529 0.67 -0.7 589,189 + GFF2529 0.67 -0.2 589,189 + GFF2529 0.67 -0.1 589,189 + GFF2529 0.67 -1.2 589,190 - GFF2529 0.67 +0.6 589,190 - GFF2529 0.67 -0.2 589,190 - GFF2529 0.67 -0.4 589,190 - GFF2529 0.67 -0.3 589,190 - GFF2529 0.67 -0.7 589,190 - GFF2529 0.67 +0.3 589,190 - GFF2529 0.67 -1.7 589,190 - GFF2529 0.67 -0.8 589,190 - GFF2529 0.67 +0.4 589,413 + -0.2 589,413 + -1.5 589,413 + -0.5 589,413 + +0.5 589,413 + +0.3 589,413 + +0.1 589,413 + -0.5 589,413 + +0.7 589,413 + -0.6 589,414 - -1.0 589,414 - -0.3 589,414 - +0.9 589,414 - -0.6 589,414 - +0.2 589,440 + -0.5 589,441 - -0.9 589,568 + -0.8 589,568 + -2.0 589,568 + +0.2 589,568 + -0.4 589,568 + +1.9 589,569 - -1.3 589,569 - -0.7 589,569 - -1.0 589,569 - -0.7
Or see this region's nucleotide sequence