Strain Fitness in Variovorax sp. SCN45 around GFF2506

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2505 and GFF2506 are separated by 1 nucleotidesGFF2506 and GFF2507 are separated by 69 nucleotidesGFF2507 and GFF2508 are separated by 11 nucleotides GFF2505 - hypothetical protein, at 565,957 to 566,991 GFF2505 GFF2506 - Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-), at 566,993 to 568,486 GFF2506 GFF2507 - Dephospho-CoA kinase (EC 2.7.1.24), at 568,556 to 569,164 GFF2507 GFF2508 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 569,176 to 570,141 GFF2508 Position (kb) 566 567 568 569Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 566.010 kb on + strandat 566.010 kb on + strandat 566.010 kb on + strandat 566.011 kb on - strandat 566.031 kb on - strandat 566.031 kb on - strandat 566.124 kb on + strand, within GFF2505at 566.125 kb on - strand, within GFF2505at 566.177 kb on + strand, within GFF2505at 566.177 kb on + strand, within GFF2505at 566.177 kb on + strand, within GFF2505at 566.219 kb on + strand, within GFF2505at 566.438 kb on + strand, within GFF2505at 566.438 kb on + strand, within GFF2505at 566.439 kb on - strand, within GFF2505at 566.439 kb on - strand, within GFF2505at 566.708 kb on + strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.742 kb on - strand, within GFF2505at 566.888 kb on + strandat 566.888 kb on + strandat 566.893 kb on + strandat 566.893 kb on + strandat 566.940 kb on - strandat 567.021 kb on + strandat 567.021 kb on + strandat 567.021 kb on + strandat 567.021 kb on + strandat 567.022 kb on - strandat 567.022 kb on - strandat 567.022 kb on - strandat 567.058 kb on - strandat 567.285 kb on + strand, within GFF2506at 567.285 kb on + strand, within GFF2506at 567.285 kb on + strand, within GFF2506at 567.285 kb on + strand, within GFF2506at 567.286 kb on - strand, within GFF2506at 567.286 kb on - strand, within GFF2506at 567.286 kb on - strand, within GFF2506at 567.286 kb on - strand, within GFF2506at 567.381 kb on + strand, within GFF2506at 567.381 kb on + strand, within GFF2506at 567.381 kb on + strand, within GFF2506at 567.382 kb on - strand, within GFF2506at 567.444 kb on + strand, within GFF2506at 567.444 kb on + strand, within GFF2506at 567.444 kb on + strand, within GFF2506at 567.444 kb on + strand, within GFF2506at 567.445 kb on - strand, within GFF2506at 567.445 kb on - strand, within GFF2506at 567.534 kb on + strand, within GFF2506at 567.534 kb on + strand, within GFF2506at 567.535 kb on - strand, within GFF2506at 567.535 kb on - strand, within GFF2506at 567.535 kb on - strand, within GFF2506at 567.535 kb on - strand, within GFF2506at 567.535 kb on - strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.576 kb on + strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.577 kb on - strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.582 kb on + strand, within GFF2506at 567.583 kb on - strand, within GFF2506at 567.583 kb on - strand, within GFF2506at 567.651 kb on + strand, within GFF2506at 567.652 kb on - strand, within GFF2506at 567.652 kb on - strand, within GFF2506at 567.652 kb on - strand, within GFF2506at 567.738 kb on + strand, within GFF2506at 567.739 kb on - strand, within GFF2506at 567.751 kb on + strand, within GFF2506at 567.751 kb on + strand, within GFF2506at 567.751 kb on + strand, within GFF2506at 567.751 kb on + strand, within GFF2506at 567.752 kb on - strand, within GFF2506at 567.753 kb on + strand, within GFF2506at 567.753 kb on + strand, within GFF2506at 567.753 kb on + strand, within GFF2506at 567.754 kb on - strand, within GFF2506at 567.778 kb on + strand, within GFF2506at 567.780 kb on + strand, within GFF2506at 567.780 kb on + strand, within GFF2506at 567.780 kb on + strand, within GFF2506at 567.781 kb on - strand, within GFF2506at 567.781 kb on - strand, within GFF2506at 567.781 kb on - strand, within GFF2506at 567.781 kb on - strand, within GFF2506at 567.781 kb on - strand, within GFF2506at 567.831 kb on + strand, within GFF2506at 567.831 kb on + strand, within GFF2506at 567.831 kb on + strand, within GFF2506at 567.924 kb on + strand, within GFF2506at 567.924 kb on + strand, within GFF2506at 567.924 kb on + strand, within GFF2506at 567.924 kb on + strand, within GFF2506at 567.924 kb on + strand, within GFF2506at 567.925 kb on - strand, within GFF2506at 567.925 kb on - strand, within GFF2506at 567.925 kb on - strand, within GFF2506at 567.925 kb on - strand, within GFF2506at 567.999 kb on + strand, within GFF2506at 567.999 kb on + strand, within GFF2506at 567.999 kb on + strand, within GFF2506at 567.999 kb on + strand, within GFF2506at 567.999 kb on + strand, within GFF2506at 567.999 kb on + strand, within GFF2506at 568.000 kb on - strand, within GFF2506at 568.000 kb on - strand, within GFF2506at 568.000 kb on - strand, within GFF2506at 568.000 kb on - strand, within GFF2506at 568.005 kb on - strand, within GFF2506at 568.017 kb on + strand, within GFF2506at 568.017 kb on + strand, within GFF2506at 568.017 kb on + strand, within GFF2506at 568.017 kb on + strand, within GFF2506at 568.017 kb on + strand, within GFF2506at 568.017 kb on + strand, within GFF2506at 568.017 kb on + strand, within GFF2506at 568.017 kb on + strand, within GFF2506at 568.018 kb on - strand, within GFF2506at 568.018 kb on - strand, within GFF2506at 568.018 kb on - strand, within GFF2506at 568.089 kb on + strand, within GFF2506at 568.090 kb on - strand, within GFF2506at 568.090 kb on - strand, within GFF2506at 568.191 kb on + strand, within GFF2506at 568.191 kb on + strand, within GFF2506at 568.192 kb on - strand, within GFF2506at 568.192 kb on - strand, within GFF2506at 568.302 kb on + strand, within GFF2506at 568.303 kb on - strand, within GFF2506at 568.303 kb on - strand, within GFF2506at 568.360 kb on - strandat 568.454 kb on + strandat 568.470 kb on + strandat 568.470 kb on + strandat 568.471 kb on - strandat 568.471 kb on - strandat 568.531 kb on + strandat 568.531 kb on + strandat 568.558 kb on - strandat 569.380 kb on - strand, within GFF2508at 569.384 kb on + strand, within GFF2508at 569.384 kb on + strand, within GFF2508at 569.384 kb on + strand, within GFF2508at 569.384 kb on + strand, within GFF2508at 569.385 kb on - strand, within GFF2508at 569.385 kb on - strand, within GFF2508at 569.435 kb on + strand, within GFF2508at 569.435 kb on + strand, within GFF2508at 569.436 kb on - strand, within GFF2508at 569.436 kb on - strand, within GFF2508at 569.477 kb on + strand, within GFF2508at 569.477 kb on + strand, within GFF2508at 569.477 kb on + strand, within GFF2508at 569.477 kb on + strand, within GFF2508at 569.477 kb on + strand, within GFF2508at 569.478 kb on - strand, within GFF2508at 569.478 kb on - strand, within GFF2508at 569.478 kb on - strand, within GFF2508at 569.478 kb on - strand, within GFF2508at 569.478 kb on - strand, within GFF2508at 569.478 kb on - strand, within GFF2508at 569.478 kb on - strand, within GFF2508at 569.478 kb on - strand, within GFF2508

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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566,010 + -1.9
566,010 + -1.6
566,010 + -1.9
566,011 - -0.1
566,031 - -1.1
566,031 - -2.2
566,124 + GFF2505 0.16 +0.1
566,125 - GFF2505 0.16 -2.3
566,177 + GFF2505 0.21 -0.6
566,177 + GFF2505 0.21 -2.6
566,177 + GFF2505 0.21 +0.6
566,219 + GFF2505 0.25 -1.6
566,438 + GFF2505 0.46 -2.0
566,438 + GFF2505 0.46 -1.1
566,439 - GFF2505 0.47 -0.9
566,439 - GFF2505 0.47 -1.6
566,708 + GFF2505 0.73 -0.4
566,709 - GFF2505 0.73 -1.8
566,709 - GFF2505 0.73 -1.7
566,709 - GFF2505 0.73 -2.1
566,709 - GFF2505 0.73 -1.1
566,709 - GFF2505 0.73 +0.9
566,709 - GFF2505 0.73 +0.3
566,709 - GFF2505 0.73 -0.4
566,709 - GFF2505 0.73 -2.4
566,709 - GFF2505 0.73 +1.9
566,709 - GFF2505 0.73 -2.9
566,742 - GFF2505 0.76 -0.5
566,888 + -1.1
566,888 + +0.1
566,893 + -0.1
566,893 + -2.0
566,940 - -1.9
567,021 + +0.0
567,021 + -0.4
567,021 + -0.8
567,021 + +0.4
567,022 - -2.0
567,022 - -2.6
567,022 - -2.6
567,058 - -1.4
567,285 + GFF2506 0.20 -0.4
567,285 + GFF2506 0.20 +0.6
567,285 + GFF2506 0.20 -1.5
567,285 + GFF2506 0.20 -1.1
567,286 - GFF2506 0.20 -0.9
567,286 - GFF2506 0.20 -1.9
567,286 - GFF2506 0.20 -0.9
567,286 - GFF2506 0.20 -2.5
567,381 + GFF2506 0.26 -0.7
567,381 + GFF2506 0.26 -1.3
567,381 + GFF2506 0.26 -1.0
567,382 - GFF2506 0.26 -2.3
567,444 + GFF2506 0.30 -0.3
567,444 + GFF2506 0.30 -1.8
567,444 + GFF2506 0.30 -1.4
567,444 + GFF2506 0.30 -0.3
567,445 - GFF2506 0.30 -0.3
567,445 - GFF2506 0.30 -0.1
567,534 + GFF2506 0.36 -1.3
567,534 + GFF2506 0.36 -0.9
567,535 - GFF2506 0.36 -2.2
567,535 - GFF2506 0.36 -0.6
567,535 - GFF2506 0.36 +0.9
567,535 - GFF2506 0.36 -0.7
567,535 - GFF2506 0.36 -0.4
567,576 + GFF2506 0.39 -1.7
567,576 + GFF2506 0.39 -0.1
567,576 + GFF2506 0.39 +0.5
567,576 + GFF2506 0.39 -0.8
567,576 + GFF2506 0.39 -0.1
567,576 + GFF2506 0.39 -1.2
567,577 - GFF2506 0.39 -0.9
567,577 - GFF2506 0.39 -1.4
567,577 - GFF2506 0.39 -1.1
567,577 - GFF2506 0.39 +0.9
567,577 - GFF2506 0.39 -2.6
567,577 - GFF2506 0.39 -1.4
567,577 - GFF2506 0.39 -1.1
567,577 - GFF2506 0.39 -0.4
567,577 - GFF2506 0.39 -0.7
567,577 - GFF2506 0.39 -0.6
567,582 + GFF2506 0.39 -1.7
567,582 + GFF2506 0.39 -2.8
567,582 + GFF2506 0.39 -1.2
567,582 + GFF2506 0.39 -0.6
567,582 + GFF2506 0.39 -0.9
567,582 + GFF2506 0.39 -1.0
567,583 - GFF2506 0.39 -1.8
567,583 - GFF2506 0.39 -1.2
567,651 + GFF2506 0.44 -0.6
567,652 - GFF2506 0.44 -2.4
567,652 - GFF2506 0.44 -1.3
567,652 - GFF2506 0.44 -0.9
567,738 + GFF2506 0.50 -1.0
567,739 - GFF2506 0.50 -1.8
567,751 + GFF2506 0.51 -1.4
567,751 + GFF2506 0.51 -2.7
567,751 + GFF2506 0.51 -1.1
567,751 + GFF2506 0.51 -0.4
567,752 - GFF2506 0.51 -2.5
567,753 + GFF2506 0.51 -0.7
567,753 + GFF2506 0.51 -0.7
567,753 + GFF2506 0.51 -0.4
567,754 - GFF2506 0.51 -1.5
567,778 + GFF2506 0.53 -1.6
567,780 + GFF2506 0.53 -0.1
567,780 + GFF2506 0.53 +0.9
567,780 + GFF2506 0.53 -0.6
567,781 - GFF2506 0.53 -3.0
567,781 - GFF2506 0.53 -2.1
567,781 - GFF2506 0.53 -1.9
567,781 - GFF2506 0.53 -0.1
567,781 - GFF2506 0.53 -0.1
567,831 + GFF2506 0.56 -1.7
567,831 + GFF2506 0.56 -1.8
567,831 + GFF2506 0.56 -3.2
567,924 + GFF2506 0.62 +1.1
567,924 + GFF2506 0.62 -1.1
567,924 + GFF2506 0.62 +0.0
567,924 + GFF2506 0.62 -0.4
567,924 + GFF2506 0.62 +0.9
567,925 - GFF2506 0.62 +0.3
567,925 - GFF2506 0.62 -0.1
567,925 - GFF2506 0.62 -0.6
567,925 - GFF2506 0.62 -0.4
567,999 + GFF2506 0.67 -0.6
567,999 + GFF2506 0.67 -1.9
567,999 + GFF2506 0.67 -0.5
567,999 + GFF2506 0.67 -2.7
567,999 + GFF2506 0.67 -0.4
567,999 + GFF2506 0.67 -1.3
568,000 - GFF2506 0.67 -1.2
568,000 - GFF2506 0.67 +0.5
568,000 - GFF2506 0.67 -0.0
568,000 - GFF2506 0.67 +0.3
568,005 - GFF2506 0.68 -1.0
568,017 + GFF2506 0.69 -0.4
568,017 + GFF2506 0.69 -1.9
568,017 + GFF2506 0.69 -2.4
568,017 + GFF2506 0.69 -0.4
568,017 + GFF2506 0.69 -1.2
568,017 + GFF2506 0.69 +1.1
568,017 + GFF2506 0.69 -0.6
568,017 + GFF2506 0.69 -2.0
568,018 - GFF2506 0.69 -0.5
568,018 - GFF2506 0.69 -1.4
568,018 - GFF2506 0.69 +0.9
568,089 + GFF2506 0.73 -1.9
568,090 - GFF2506 0.73 -1.0
568,090 - GFF2506 0.73 +0.0
568,191 + GFF2506 0.80 +0.9
568,191 + GFF2506 0.80 +0.9
568,192 - GFF2506 0.80 -1.3
568,192 - GFF2506 0.80 -0.4
568,302 + GFF2506 0.88 -1.6
568,303 - GFF2506 0.88 -0.3
568,303 - GFF2506 0.88 -2.5
568,360 - +0.3
568,454 + -1.2
568,470 + -2.3
568,470 + +0.2
568,471 - -0.1
568,471 - -0.0
568,531 + -0.5
568,531 + -2.3
568,558 - -0.3
569,380 - GFF2508 0.21 +3.7
569,384 + GFF2508 0.22 +3.4
569,384 + GFF2508 0.22 +3.3
569,384 + GFF2508 0.22 +4.3
569,384 + GFF2508 0.22 +3.5
569,385 - GFF2508 0.22 +3.9
569,385 - GFF2508 0.22 +3.6
569,435 + GFF2508 0.27 +3.4
569,435 + GFF2508 0.27 +3.1
569,436 - GFF2508 0.27 +4.8
569,436 - GFF2508 0.27 +4.2
569,477 + GFF2508 0.31 +3.7
569,477 + GFF2508 0.31 +4.3
569,477 + GFF2508 0.31 +3.4
569,477 + GFF2508 0.31 +4.9
569,477 + GFF2508 0.31 +3.7
569,478 - GFF2508 0.31 +3.7
569,478 - GFF2508 0.31 +3.2
569,478 - GFF2508 0.31 +4.0
569,478 - GFF2508 0.31 +3.8
569,478 - GFF2508 0.31 +3.8
569,478 - GFF2508 0.31 +4.2
569,478 - GFF2508 0.31 +4.2
569,478 - GFF2508 0.31 +3.5

Or see this region's nucleotide sequence