Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2487 and GFF2488 overlap by 4 nucleotides GFF2488 and GFF2489 are separated by 127 nucleotides GFF2489 and GFF2490 are separated by 7 nucleotides
GFF2487 - Two-component system sensor histidine kinase/response regulator hybrid, at 543,418 to 547,056
GFF2487
GFF2488 - Two-component transcriptional response regulator, LuxR family, at 547,053 to 548,093
GFF2488
GFF2489 - hypothetical protein, at 548,221 to 548,880
GFF2489
GFF2490 - Transcriptional regulator, LysR family, at 548,888 to 549,808
GFF2490
Position (kb) 547
548
549 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 546.067 kb on + strand, within GFF2487 at 546.107 kb on - strand, within GFF2487 at 546.904 kb on + strand at 546.904 kb on + strand at 546.905 kb on - strand at 546.905 kb on - strand at 547.109 kb on + strand at 547.212 kb on + strand, within GFF2488 at 547.212 kb on + strand, within GFF2488 at 547.377 kb on - strand, within GFF2488 at 547.437 kb on + strand, within GFF2488 at 547.437 kb on + strand, within GFF2488 at 547.437 kb on + strand, within GFF2488 at 547.438 kb on - strand, within GFF2488 at 547.645 kb on - strand, within GFF2488 at 547.645 kb on - strand, within GFF2488 at 547.914 kb on + strand, within GFF2488 at 547.914 kb on + strand, within GFF2488 at 547.915 kb on - strand, within GFF2488 at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.324 kb on - strand, within GFF2489 at 548.324 kb on - strand, within GFF2489 at 548.899 kb on - strand at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.057 kb on + strand, within GFF2490 at 549.058 kb on - strand, within GFF2490
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 546,067 + GFF2487 0.73 +0.4 546,107 - GFF2487 0.74 +0.6 546,904 + -0.4 546,904 + -1.2 546,905 - +0.6 546,905 - -0.6 547,109 + +0.2 547,212 + GFF2488 0.15 +2.9 547,212 + GFF2488 0.15 -0.5 547,377 - GFF2488 0.31 -0.6 547,437 + GFF2488 0.37 -0.7 547,437 + GFF2488 0.37 -0.6 547,437 + GFF2488 0.37 +0.3 547,438 - GFF2488 0.37 -0.1 547,645 - GFF2488 0.57 -1.3 547,645 - GFF2488 0.57 -1.9 547,914 + GFF2488 0.83 -0.2 547,914 + GFF2488 0.83 -0.7 547,915 - GFF2488 0.83 -0.5 548,004 + -0.3 548,004 + -0.4 548,004 + +1.6 548,004 + -0.1 548,004 + +0.6 548,146 + -0.6 548,146 + -0.7 548,146 + -0.2 548,146 + -0.4 548,146 + -0.4 548,147 - +0.3 548,147 - -0.2 548,147 - +0.1 548,147 - -0.1 548,147 - +0.1 548,147 - +0.6 548,323 + GFF2489 0.15 -0.1 548,323 + GFF2489 0.15 +0.4 548,323 + GFF2489 0.15 -0.5 548,323 + GFF2489 0.15 -0.7 548,323 + GFF2489 0.15 -0.3 548,324 - GFF2489 0.16 -0.2 548,324 - GFF2489 0.16 +0.3 548,899 - +0.1 549,012 + GFF2490 0.13 +1.6 549,012 + GFF2490 0.13 -0.3 549,012 + GFF2490 0.13 -0.4 549,012 + GFF2490 0.13 +0.5 549,012 + GFF2490 0.13 -1.1 549,013 - GFF2490 0.14 -0.7 549,013 - GFF2490 0.14 +1.3 549,013 - GFF2490 0.14 -0.4 549,013 - GFF2490 0.14 +1.0 549,057 + GFF2490 0.18 -0.2 549,058 - GFF2490 0.18 +0.0
Or see this region's nucleotide sequence