Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2479 and GFF2480 are separated by 23 nucleotides GFF2480 and GFF2481 are separated by 15 nucleotides GFF2481 and GFF2482 are separated by 12 nucleotides GFF2482 and GFF2483 are separated by 91 nucleotides
GFF2479 - hypothetical protein, at 538,093 to 538,272
GFF2479
GFF2480 - Urease accessory protein UreG, at 538,296 to 538,946
GFF2480
GFF2481 - Urease accessory protein UreF, at 538,962 to 539,630
GFF2481
GFF2482 - Urease accessory protein UreE, at 539,643 to 540,257
GFF2482
GFF2483 - Urease alpha subunit (EC 3.5.1.5), at 540,349 to 542,067
GFF2483
Position (kb) 538
539
540 Strain fitness (log2 ratio) -1
0
1
2 at 538.169 kb on - strand, within GFF2479 at 538.169 kb on - strand, within GFF2479 at 538.169 kb on - strand, within GFF2479 at 538.255 kb on + strand at 538.381 kb on + strand, within GFF2480 at 538.444 kb on + strand, within GFF2480 at 538.444 kb on + strand, within GFF2480 at 538.445 kb on - strand, within GFF2480 at 538.546 kb on + strand, within GFF2480 at 538.546 kb on + strand, within GFF2480 at 538.546 kb on + strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.784 kb on - strand, within GFF2480 at 538.784 kb on - strand, within GFF2480 at 538.813 kb on + strand, within GFF2480 at 538.813 kb on + strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.984 kb on + strand at 539.251 kb on + strand, within GFF2481 at 539.560 kb on + strand, within GFF2481 at 539.959 kb on + strand, within GFF2482 at 539.960 kb on - strand, within GFF2482 at 540.303 kb on + strand at 540.304 kb on - strand at 540.304 kb on - strand at 540.304 kb on - strand at 540.304 kb on - strand at 540.362 kb on + strand at 540.363 kb on - strand at 540.464 kb on + strand at 540.464 kb on + strand at 540.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 538,169 - GFF2479 0.42 +0.1 538,169 - GFF2479 0.42 -0.1 538,169 - GFF2479 0.42 +1.3 538,255 + -0.4 538,381 + GFF2480 0.13 +0.8 538,444 + GFF2480 0.23 +0.7 538,444 + GFF2480 0.23 -0.7 538,445 - GFF2480 0.23 +0.0 538,546 + GFF2480 0.38 +0.1 538,546 + GFF2480 0.38 +0.6 538,546 + GFF2480 0.38 -0.4 538,547 - GFF2480 0.39 +0.3 538,547 - GFF2480 0.39 +0.2 538,547 - GFF2480 0.39 -0.0 538,547 - GFF2480 0.39 -0.1 538,547 - GFF2480 0.39 +0.0 538,547 - GFF2480 0.39 -0.9 538,783 + GFF2480 0.75 -0.8 538,783 + GFF2480 0.75 +0.5 538,783 + GFF2480 0.75 -0.0 538,783 + GFF2480 0.75 -0.1 538,783 + GFF2480 0.75 -0.2 538,783 + GFF2480 0.75 +0.1 538,783 + GFF2480 0.75 -0.0 538,783 + GFF2480 0.75 -0.1 538,783 + GFF2480 0.75 +0.3 538,784 - GFF2480 0.75 -1.3 538,784 - GFF2480 0.75 +0.3 538,813 + GFF2480 0.79 +0.1 538,813 + GFF2480 0.79 +0.9 538,814 - GFF2480 0.80 -0.7 538,814 - GFF2480 0.80 -1.1 538,814 - GFF2480 0.80 -0.3 538,814 - GFF2480 0.80 -0.3 538,814 - GFF2480 0.80 -0.4 538,814 - GFF2480 0.80 -0.7 538,984 + +0.3 539,251 + GFF2481 0.43 -0.4 539,560 + GFF2481 0.89 -0.5 539,959 + GFF2482 0.51 -1.4 539,960 - GFF2482 0.52 -0.1 540,303 + -0.3 540,304 - -0.3 540,304 - +0.1 540,304 - +0.4 540,304 - +1.1 540,362 + -1.2 540,363 - -0.3 540,464 + +1.9 540,464 + -0.8 540,465 - +0.1
Or see this region's nucleotide sequence