Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2471 and GFF2472 are separated by 34 nucleotides GFF2472 and GFF2473 overlap by 4 nucleotides GFF2473 and GFF2474 are separated by 214 nucleotides GFF2474 and GFF2475 overlap by 4 nucleotides
GFF2471 - Outer membrane porin protein 32 precursor, at 530,824 to 531,981
GFF2471
GFF2472 - no description, at 532,016 to 532,285
GFF2472
GFF2473 - hypothetical protein, at 532,282 to 532,893
GFF2473
GFF2474 - Two-component transcriptional response regulator SMc02366, LuxR family, at 533,108 to 533,791
GFF2474
GFF2475 - no description, at 533,788 to 535,158
GFF2475
Position (kb) 532
533 Strain fitness (log2 ratio) -1
0
1 at 531.295 kb on + strand, within GFF2471 at 531.352 kb on + strand, within GFF2471 at 531.353 kb on - strand, within GFF2471 at 531.353 kb on - strand, within GFF2471 at 531.922 kb on + strand at 531.922 kb on + strand at 531.922 kb on + strand at 531.952 kb on + strand at 532.615 kb on + strand, within GFF2473 at 532.615 kb on + strand, within GFF2473 at 532.822 kb on + strand, within GFF2473 at 532.822 kb on + strand, within GFF2473 at 532.823 kb on - strand, within GFF2473 at 532.823 kb on - strand, within GFF2473 at 532.891 kb on + strand at 532.891 kb on + strand at 532.892 kb on - strand at 532.892 kb on - strand at 532.916 kb on - strand at 532.953 kb on + strand at 532.954 kb on - strand at 533.055 kb on + strand at 533.095 kb on - strand at 533.095 kb on - strand at 533.095 kb on - strand at 533.153 kb on + strand at 533.405 kb on + strand, within GFF2474 at 533.405 kb on + strand, within GFF2474 at 533.406 kb on - strand, within GFF2474 at 533.658 kb on - strand, within GFF2474 at 533.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 531,295 + GFF2471 0.41 -0.4 531,352 + GFF2471 0.46 +0.1 531,353 - GFF2471 0.46 -0.9 531,353 - GFF2471 0.46 -0.4 531,922 + -0.7 531,922 + +0.3 531,922 + -0.0 531,952 + -0.6 532,615 + GFF2473 0.54 -0.3 532,615 + GFF2473 0.54 +0.1 532,822 + GFF2473 0.88 +1.4 532,822 + GFF2473 0.88 +0.1 532,823 - GFF2473 0.88 +1.4 532,823 - GFF2473 0.88 -0.4 532,891 + +0.2 532,891 + -0.5 532,892 - -0.8 532,892 - -0.0 532,916 - -0.4 532,953 + +0.4 532,954 - +0.1 533,055 + +0.1 533,095 - +1.2 533,095 - -0.0 533,095 - +0.9 533,153 + +0.2 533,405 + GFF2474 0.43 +0.3 533,405 + GFF2474 0.43 -0.7 533,406 - GFF2474 0.44 +0.4 533,658 - GFF2474 0.80 -0.9 533,843 - -1.6
Or see this region's nucleotide sequence