Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2464 and GFF2465 are separated by 33 nucleotides GFF2465 and GFF2466 overlap by 4 nucleotides GFF2466 and GFF2467 are separated by 2 nucleotides GFF2467 and GFF2468 are separated by 16 nucleotides
GFF2464 - Sensory histidine kinase BaeS, at 523,970 to 525,730
GFF2464
GFF2465 - no description, at 525,764 to 525,925
GFF2465
GFF2466 - no description, at 525,922 to 526,788
GFF2466
GFF2467 - Response regulator BaeR, at 526,791 to 527,507
GFF2467
GFF2468 - Outer membrane protein assembly factor YaeT, at 527,524 to 529,926
GFF2468
Position (kb) 525
526
527 Strain fitness (log2 ratio) -2
-1
0
1 at 525.072 kb on + strand, within GFF2464 at 525.073 kb on - strand, within GFF2464 at 525.073 kb on - strand, within GFF2464 at 525.073 kb on - strand, within GFF2464 at 525.073 kb on - strand, within GFF2464 at 525.255 kb on + strand, within GFF2464 at 525.262 kb on - strand, within GFF2464 at 525.393 kb on + strand, within GFF2464 at 525.393 kb on + strand, within GFF2464 at 525.453 kb on + strand, within GFF2464 at 525.453 kb on + strand, within GFF2464 at 526.069 kb on + strand, within GFF2466 at 526.069 kb on + strand, within GFF2466 at 526.069 kb on + strand, within GFF2466 at 526.070 kb on - strand, within GFF2466 at 526.070 kb on - strand, within GFF2466 at 526.070 kb on - strand, within GFF2466 at 526.217 kb on - strand, within GFF2466 at 526.445 kb on - strand, within GFF2466 at 526.564 kb on + strand, within GFF2466 at 527.192 kb on - strand, within GFF2467 at 527.192 kb on - strand, within GFF2467 at 527.603 kb on + strand at 527.621 kb on + strand at 527.765 kb on + strand, within GFF2468 at 527.765 kb on + strand, within GFF2468 at 527.765 kb on + strand, within GFF2468 at 527.766 kb on - strand, within GFF2468
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 525,072 + GFF2464 0.63 +0.1 525,073 - GFF2464 0.63 +1.6 525,073 - GFF2464 0.63 -0.1 525,073 - GFF2464 0.63 +0.3 525,073 - GFF2464 0.63 +0.0 525,255 + GFF2464 0.73 -0.1 525,262 - GFF2464 0.73 -0.9 525,393 + GFF2464 0.81 -0.2 525,393 + GFF2464 0.81 -1.2 525,453 + GFF2464 0.84 +1.5 525,453 + GFF2464 0.84 +0.3 526,069 + GFF2466 0.17 -0.1 526,069 + GFF2466 0.17 +0.9 526,069 + GFF2466 0.17 +0.0 526,070 - GFF2466 0.17 +1.2 526,070 - GFF2466 0.17 +1.2 526,070 - GFF2466 0.17 -0.1 526,217 - GFF2466 0.34 +0.3 526,445 - GFF2466 0.60 +1.1 526,564 + GFF2466 0.74 +1.5 527,192 - GFF2467 0.56 +0.9 527,192 - GFF2467 0.56 +0.3 527,603 + +0.7 527,621 + -2.0 527,765 + GFF2468 0.10 +0.6 527,765 + GFF2468 0.10 +0.9 527,765 + GFF2468 0.10 +0.3 527,766 - GFF2468 0.10 -0.5
Or see this region's nucleotide sequence