Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF237 and GFF238 are separated by 136 nucleotides GFF238 and GFF239 are separated by 1 nucleotides GFF239 and GFF240 overlap by 4 nucleotides GFF240 and GFF241 are separated by 21 nucleotides
GFF237 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 265,469 to 266,686
GFF237
GFF238 - hypothetical protein, at 266,823 to 267,221
GFF238
GFF239 - DNA polymerase III chi subunit (EC 2.7.7.7), at 267,223 to 267,663
GFF239
GFF240 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 267,660 to 269,159
GFF240
GFF241 - Lipopolysaccharide export system permease protein LptF, at 269,181 to 270,302
GFF241
Position (kb) 267
268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 266.712 kb on - strand at 266.716 kb on + strand at 266.745 kb on + strand at 266.745 kb on + strand at 266.746 kb on - strand at 266.813 kb on - strand at 266.824 kb on + strand at 266.824 kb on + strand at 266.825 kb on - strand at 266.843 kb on + strand at 266.844 kb on - strand at 266.844 kb on - strand at 266.844 kb on - strand at 266.844 kb on - strand at 266.844 kb on - strand at 267.275 kb on + strand, within GFF239 at 267.617 kb on + strand, within GFF239 at 267.618 kb on - strand, within GFF239 at 267.618 kb on - strand, within GFF239 at 267.618 kb on - strand, within GFF239 at 267.618 kb on - strand, within GFF239 at 267.641 kb on + strand at 267.642 kb on - strand at 267.742 kb on + strand at 267.742 kb on + strand at 267.742 kb on + strand at 267.940 kb on + strand, within GFF240 at 267.941 kb on - strand, within GFF240 at 268.123 kb on + strand, within GFF240 at 268.123 kb on + strand, within GFF240 at 268.123 kb on + strand, within GFF240 at 268.123 kb on + strand, within GFF240 at 268.123 kb on + strand, within GFF240 at 268.124 kb on - strand, within GFF240 at 268.124 kb on - strand, within GFF240 at 268.124 kb on - strand, within GFF240 at 268.124 kb on - strand, within GFF240 at 268.124 kb on - strand, within GFF240 at 268.454 kb on - strand, within GFF240 at 268.774 kb on + strand, within GFF240 at 268.774 kb on + strand, within GFF240 at 268.774 kb on + strand, within GFF240 at 268.774 kb on + strand, within GFF240 at 268.774 kb on + strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 269.159 kb on + strand at 269.159 kb on + strand at 269.160 kb on - strand at 269.186 kb on - strand at 269.186 kb on - strand at 269.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 266,712 - +1.5 266,716 + +0.1 266,745 + -1.2 266,745 + -0.9 266,746 - -0.9 266,813 - +0.7 266,824 + +0.4 266,824 + +0.9 266,825 - -0.1 266,843 + -0.7 266,844 - +0.6 266,844 - +0.3 266,844 - +0.3 266,844 - +0.7 266,844 - +0.3 267,275 + GFF239 0.12 -2.2 267,617 + GFF239 0.89 +0.3 267,618 - GFF239 0.90 -1.2 267,618 - GFF239 0.90 -0.5 267,618 - GFF239 0.90 -1.2 267,618 - GFF239 0.90 -1.4 267,641 + -1.1 267,642 - -0.9 267,742 + -0.0 267,742 + +0.8 267,742 + -1.2 267,940 + GFF240 0.19 -1.1 267,941 - GFF240 0.19 -0.5 268,123 + GFF240 0.31 -0.1 268,123 + GFF240 0.31 -1.7 268,123 + GFF240 0.31 -2.7 268,123 + GFF240 0.31 -1.8 268,123 + GFF240 0.31 -0.7 268,124 - GFF240 0.31 -0.7 268,124 - GFF240 0.31 -1.5 268,124 - GFF240 0.31 -0.6 268,124 - GFF240 0.31 +0.3 268,124 - GFF240 0.31 -0.3 268,454 - GFF240 0.53 -1.2 268,774 + GFF240 0.74 +0.6 268,774 + GFF240 0.74 -0.1 268,774 + GFF240 0.74 -1.8 268,774 + GFF240 0.74 -2.5 268,774 + GFF240 0.74 +0.3 268,775 - GFF240 0.74 -1.1 268,775 - GFF240 0.74 +0.0 268,775 - GFF240 0.74 -0.6 268,775 - GFF240 0.74 -2.5 268,775 - GFF240 0.74 -1.6 268,775 - GFF240 0.74 -1.0 268,775 - GFF240 0.74 -1.1 268,775 - GFF240 0.74 -2.6 268,775 - GFF240 0.74 -1.8 268,780 + GFF240 0.75 -2.8 268,780 + GFF240 0.75 -1.9 268,780 + GFF240 0.75 -0.4 268,780 + GFF240 0.75 -1.5 268,780 + GFF240 0.75 -1.7 268,780 + GFF240 0.75 -2.3 268,780 + GFF240 0.75 -1.2 268,780 + GFF240 0.75 -1.8 268,780 + GFF240 0.75 +0.9 268,780 + GFF240 0.75 -0.7 268,780 + GFF240 0.75 -1.3 268,780 + GFF240 0.75 -0.9 268,781 - GFF240 0.75 -0.4 268,781 - GFF240 0.75 -1.9 268,781 - GFF240 0.75 -0.9 268,781 - GFF240 0.75 -1.8 268,781 - GFF240 0.75 -1.1 268,781 - GFF240 0.75 +0.1 268,781 - GFF240 0.75 -1.0 268,781 - GFF240 0.75 -2.0 268,781 - GFF240 0.75 -1.0 268,781 - GFF240 0.75 +0.1 268,781 - GFF240 0.75 -1.7 269,159 + -0.7 269,159 + -0.9 269,160 - -0.1 269,186 - +0.1 269,186 - +1.3 269,186 - -0.1
Or see this region's nucleotide sequence