Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2398 and GFF2399 are separated by 1 nucleotides GFF2399 and GFF2400 are separated by 73 nucleotides
GFF2398 - Uncharacterized MFS-type transporter, at 449,506 to 450,933
GFF2398
GFF2399 - TonB-dependent receptor, at 450,935 to 453,469
GFF2399
GFF2400 - no description, at 453,543 to 454,592
GFF2400
Position (kb) 450
451
452
453
454 Strain fitness (log2 ratio) -2
-1
0
1
2 at 450.569 kb on + strand, within GFF2398 at 450.569 kb on + strand, within GFF2398 at 450.570 kb on - strand, within GFF2398 at 451.065 kb on + strand at 451.065 kb on + strand at 451.066 kb on - strand at 451.066 kb on - strand at 451.066 kb on - strand at 451.165 kb on - strand at 451.189 kb on - strand, within GFF2399 at 451.210 kb on - strand, within GFF2399 at 451.491 kb on + strand, within GFF2399 at 451.491 kb on + strand, within GFF2399 at 451.492 kb on - strand, within GFF2399 at 451.539 kb on + strand, within GFF2399 at 451.539 kb on + strand, within GFF2399 at 451.552 kb on - strand, within GFF2399 at 451.552 kb on - strand, within GFF2399 at 451.659 kb on + strand, within GFF2399 at 451.660 kb on - strand, within GFF2399 at 451.687 kb on - strand, within GFF2399 at 451.687 kb on - strand, within GFF2399 at 451.687 kb on - strand, within GFF2399 at 451.704 kb on + strand, within GFF2399 at 451.704 kb on + strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.786 kb on - strand, within GFF2399 at 451.984 kb on - strand, within GFF2399 at 452.079 kb on - strand, within GFF2399 at 452.121 kb on + strand, within GFF2399 at 452.206 kb on - strand, within GFF2399 at 452.244 kb on + strand, within GFF2399 at 452.466 kb on + strand, within GFF2399 at 452.466 kb on + strand, within GFF2399 at 452.466 kb on + strand, within GFF2399 at 452.467 kb on - strand, within GFF2399 at 452.541 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.796 kb on + strand, within GFF2399 at 452.796 kb on + strand, within GFF2399 at 452.797 kb on - strand, within GFF2399 at 452.910 kb on + strand, within GFF2399 at 452.910 kb on + strand, within GFF2399 at 452.911 kb on - strand, within GFF2399 at 453.220 kb on - strand at 453.220 kb on - strand at 453.220 kb on - strand at 453.250 kb on - strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.540 kb on - strand at 453.540 kb on - strand at 453.540 kb on - strand at 453.540 kb on - strand at 453.544 kb on + strand at 453.544 kb on + strand at 453.545 kb on - strand at 453.545 kb on - strand at 453.704 kb on - strand, within GFF2400 at 454.195 kb on + strand, within GFF2400 at 454.195 kb on + strand, within GFF2400 at 454.195 kb on + strand, within GFF2400 at 454.196 kb on - strand, within GFF2400 at 454.223 kb on - strand, within GFF2400
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 450,569 + GFF2398 0.74 -0.1 450,569 + GFF2398 0.74 +1.9 450,570 - GFF2398 0.75 +0.9 451,065 + +0.7 451,065 + +1.1 451,066 - -1.1 451,066 - -0.5 451,066 - +0.1 451,165 - +1.9 451,189 - GFF2399 0.10 -0.9 451,210 - GFF2399 0.11 +0.5 451,491 + GFF2399 0.22 +0.3 451,491 + GFF2399 0.22 -0.4 451,492 - GFF2399 0.22 +0.1 451,539 + GFF2399 0.24 +0.8 451,539 + GFF2399 0.24 +0.3 451,552 - GFF2399 0.24 +0.6 451,552 - GFF2399 0.24 +0.2 451,659 + GFF2399 0.29 -0.4 451,660 - GFF2399 0.29 +2.7 451,687 - GFF2399 0.30 +0.2 451,687 - GFF2399 0.30 -0.9 451,687 - GFF2399 0.30 +0.5 451,704 + GFF2399 0.30 -1.4 451,704 + GFF2399 0.30 +0.5 451,705 - GFF2399 0.30 -0.0 451,705 - GFF2399 0.30 +0.8 451,705 - GFF2399 0.30 +1.2 451,705 - GFF2399 0.30 -0.1 451,705 - GFF2399 0.30 -0.7 451,705 - GFF2399 0.30 +0.9 451,705 - GFF2399 0.30 -1.0 451,705 - GFF2399 0.30 +0.9 451,705 - GFF2399 0.30 +0.2 451,786 - GFF2399 0.34 +0.6 451,984 - GFF2399 0.41 -0.4 452,079 - GFF2399 0.45 +0.5 452,121 + GFF2399 0.47 -0.5 452,206 - GFF2399 0.50 +0.2 452,244 + GFF2399 0.52 +0.0 452,466 + GFF2399 0.60 -1.4 452,466 + GFF2399 0.60 -0.3 452,466 + GFF2399 0.60 +0.4 452,467 - GFF2399 0.60 -0.0 452,541 - GFF2399 0.63 -1.8 452,641 - GFF2399 0.67 -0.3 452,641 - GFF2399 0.67 +1.1 452,641 - GFF2399 0.67 -0.1 452,641 - GFF2399 0.67 -1.3 452,641 - GFF2399 0.67 -0.3 452,641 - GFF2399 0.67 +0.6 452,796 + GFF2399 0.73 +0.1 452,796 + GFF2399 0.73 +1.9 452,797 - GFF2399 0.73 +0.4 452,910 + GFF2399 0.78 -0.5 452,910 + GFF2399 0.78 +0.3 452,911 - GFF2399 0.78 -2.4 453,220 - +0.0 453,220 - -0.4 453,220 - -0.3 453,250 - -0.6 453,539 + -0.3 453,539 + -0.4 453,539 + -0.1 453,539 + +0.1 453,539 + -1.1 453,539 + +0.6 453,540 - +0.3 453,540 - +1.3 453,540 - +0.3 453,540 - -0.3 453,544 + +0.2 453,544 + -1.1 453,545 - -0.4 453,545 - +0.7 453,704 - GFF2400 0.15 -0.3 454,195 + GFF2400 0.62 -0.1 454,195 + GFF2400 0.62 +0.8 454,195 + GFF2400 0.62 -0.6 454,196 - GFF2400 0.62 -0.8 454,223 - GFF2400 0.65 +0.8
Or see this region's nucleotide sequence