Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2395 and GFF2396 overlap by 13 nucleotides GFF2396 and GFF2397 overlap by 4 nucleotides
GFF2395 - D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-), at 444,191 to 445,384
GFF2395
GFF2396 - MlrC, at 445,372 to 447,765
GFF2396
GFF2397 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 447,762 to 449,456
GFF2397
Position (kb) 445
446
447
448 Strain fitness (log2 ratio) -1
0
1
2
3 at 444.646 kb on - strand, within GFF2395 at 444.828 kb on + strand, within GFF2395 at 444.829 kb on - strand, within GFF2395 at 445.116 kb on + strand, within GFF2395 at 445.117 kb on - strand, within GFF2395 at 445.149 kb on + strand, within GFF2395 at 445.707 kb on - strand, within GFF2396 at 445.707 kb on - strand, within GFF2396 at 445.928 kb on + strand, within GFF2396 at 445.929 kb on - strand, within GFF2396 at 445.929 kb on - strand, within GFF2396 at 445.929 kb on - strand, within GFF2396 at 446.084 kb on + strand, within GFF2396 at 446.085 kb on - strand, within GFF2396 at 446.085 kb on - strand, within GFF2396 at 446.085 kb on - strand, within GFF2396 at 446.085 kb on - strand, within GFF2396 at 446.099 kb on + strand, within GFF2396 at 446.099 kb on + strand, within GFF2396 at 446.100 kb on - strand, within GFF2396 at 446.243 kb on + strand, within GFF2396 at 446.244 kb on - strand, within GFF2396 at 446.333 kb on + strand, within GFF2396 at 446.402 kb on + strand, within GFF2396 at 446.402 kb on + strand, within GFF2396 at 446.402 kb on + strand, within GFF2396 at 446.402 kb on + strand, within GFF2396 at 446.402 kb on + strand, within GFF2396 at 446.403 kb on - strand, within GFF2396 at 446.403 kb on - strand, within GFF2396 at 446.403 kb on - strand, within GFF2396 at 447.284 kb on + strand, within GFF2396 at 447.284 kb on + strand, within GFF2396 at 447.528 kb on - strand at 447.684 kb on - strand at 447.684 kb on - strand at 447.783 kb on + strand at 447.784 kb on - strand at 447.784 kb on - strand at 448.034 kb on - strand, within GFF2397 at 448.368 kb on + strand, within GFF2397 at 448.579 kb on + strand, within GFF2397 at 448.580 kb on - strand, within GFF2397
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 444,646 - GFF2395 0.38 +1.6 444,828 + GFF2395 0.53 +0.1 444,829 - GFF2395 0.53 +0.1 445,116 + GFF2395 0.77 -0.8 445,117 - GFF2395 0.78 -0.2 445,149 + GFF2395 0.80 +0.5 445,707 - GFF2396 0.14 +0.2 445,707 - GFF2396 0.14 +0.5 445,928 + GFF2396 0.23 -1.1 445,929 - GFF2396 0.23 -0.1 445,929 - GFF2396 0.23 +0.2 445,929 - GFF2396 0.23 +2.9 446,084 + GFF2396 0.30 -0.5 446,085 - GFF2396 0.30 +0.6 446,085 - GFF2396 0.30 +0.4 446,085 - GFF2396 0.30 -0.6 446,085 - GFF2396 0.30 -0.2 446,099 + GFF2396 0.30 -0.7 446,099 + GFF2396 0.30 +0.1 446,100 - GFF2396 0.30 -0.3 446,243 + GFF2396 0.36 +1.6 446,244 - GFF2396 0.36 +0.3 446,333 + GFF2396 0.40 -0.2 446,402 + GFF2396 0.43 -1.5 446,402 + GFF2396 0.43 -0.1 446,402 + GFF2396 0.43 +0.1 446,402 + GFF2396 0.43 -1.4 446,402 + GFF2396 0.43 -0.4 446,403 - GFF2396 0.43 -0.0 446,403 - GFF2396 0.43 +0.4 446,403 - GFF2396 0.43 +0.2 447,284 + GFF2396 0.80 +0.4 447,284 + GFF2396 0.80 -0.5 447,528 - +0.4 447,684 - +0.5 447,684 - -0.6 447,783 + -0.7 447,784 - -0.6 447,784 - +0.1 448,034 - GFF2397 0.16 +1.0 448,368 + GFF2397 0.36 -1.5 448,579 + GFF2397 0.48 -1.1 448,580 - GFF2397 0.48 +0.1
Or see this region's nucleotide sequence