Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2386 and GFF2387 overlap by 13 nucleotides GFF2387 and GFF2388 are separated by 2 nucleotides GFF2388 and GFF2389 are separated by 333 nucleotides GFF2389 and GFF2390 are separated by 66 nucleotides GFF2390 and GFF2391 are separated by 19 nucleotides
GFF2386 - Response regulator BaeR, at 439,679 to 439,999
GFF2386
GFF2387 - no description, at 439,987 to 440,280
GFF2387
GFF2388 - hypothetical protein, at 440,283 to 440,759
GFF2388
GFF2389 - hypothetical protein, at 441,093 to 441,320
GFF2389
GFF2390 - no description, at 441,387 to 441,695
GFF2390
GFF2391 - KEGG: periplasmic protein TonB, at 441,715 to 442,368
GFF2391
Position (kb) 440
441 Strain fitness (log2 ratio) -2
-1
0
1
2 at 439.407 kb on + strand at 439.408 kb on - strand at 439.408 kb on - strand at 439.408 kb on - strand at 439.408 kb on - strand at 439.409 kb on + strand at 439.409 kb on + strand at 439.410 kb on - strand at 439.410 kb on - strand at 439.410 kb on - strand at 439.410 kb on - strand at 439.628 kb on - strand at 439.629 kb on + strand at 439.630 kb on - strand at 439.650 kb on + strand at 439.651 kb on - strand at 439.862 kb on + strand, within GFF2386 at 439.863 kb on - strand, within GFF2386 at 439.863 kb on - strand, within GFF2386 at 439.863 kb on - strand, within GFF2386 at 439.970 kb on + strand at 439.970 kb on + strand at 440.495 kb on - strand, within GFF2388 at 440.659 kb on + strand, within GFF2388 at 440.659 kb on + strand, within GFF2388 at 440.660 kb on - strand, within GFF2388 at 440.898 kb on + strand at 441.183 kb on + strand, within GFF2389 at 441.207 kb on + strand, within GFF2389 at 441.208 kb on - strand, within GFF2389 at 441.222 kb on + strand, within GFF2389 at 441.222 kb on + strand, within GFF2389 at 441.222 kb on + strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.386 kb on + strand at 441.386 kb on + strand at 441.564 kb on + strand, within GFF2390 at 441.565 kb on - strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.589 kb on - strand, within GFF2390 at 441.603 kb on + strand, within GFF2390 at 441.604 kb on - strand, within GFF2390
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 439,407 + -1.1 439,408 - -0.3 439,408 - -0.4 439,408 - +0.2 439,408 - -0.6 439,409 + +0.2 439,409 + -0.2 439,410 - -0.3 439,410 - -0.1 439,410 - +0.5 439,410 - -2.0 439,628 - +0.2 439,629 + +0.2 439,630 - +0.6 439,650 + -2.6 439,651 - +0.4 439,862 + GFF2386 0.57 -0.3 439,863 - GFF2386 0.57 +0.3 439,863 - GFF2386 0.57 +0.1 439,863 - GFF2386 0.57 -0.4 439,970 + -1.5 439,970 + -0.3 440,495 - GFF2388 0.44 -1.0 440,659 + GFF2388 0.79 -1.4 440,659 + GFF2388 0.79 -0.3 440,660 - GFF2388 0.79 -0.6 440,898 + +0.6 441,183 + GFF2389 0.39 -0.7 441,207 + GFF2389 0.50 -0.3 441,208 - GFF2389 0.50 +0.1 441,222 + GFF2389 0.57 +0.9 441,222 + GFF2389 0.57 +0.1 441,222 + GFF2389 0.57 +0.2 441,223 - GFF2389 0.57 -1.3 441,223 - GFF2389 0.57 +2.5 441,223 - GFF2389 0.57 +0.9 441,223 - GFF2389 0.57 -1.0 441,223 - GFF2389 0.57 +0.3 441,386 + +0.9 441,386 + +1.9 441,564 + GFF2390 0.57 -0.1 441,565 - GFF2390 0.58 -0.0 441,588 + GFF2390 0.65 -0.1 441,588 + GFF2390 0.65 -2.1 441,588 + GFF2390 0.65 -0.3 441,589 - GFF2390 0.65 -1.6 441,603 + GFF2390 0.70 -0.9 441,604 - GFF2390 0.70 +1.1
Or see this region's nucleotide sequence