Strain Fitness in Variovorax sp. SCN45 around GFF2379

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2378 and GFF2379 are separated by 91 nucleotidesGFF2379 and GFF2380 are separated by 7 nucleotidesGFF2380 and GFF2381 are separated by 43 nucleotides GFF2378 - UPF0701 protein YicC, at 432,527 to 433,450 GFF2378 GFF2379 - Serine/threonine protein kinase, at 433,542 to 434,549 GFF2379 GFF2380 - Protein phosphatase 2C-like, at 434,557 to 435,465 GFF2380 GFF2381 - Ribonuclease PH (EC 2.7.7.56), at 435,509 to 436,243 GFF2381 Position (kb) 433 434 435Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 432.587 kb on + strandat 432.588 kb on - strandat 433.541 kb on + strandat 433.594 kb on - strandat 433.603 kb on + strandat 433.603 kb on + strandat 433.603 kb on + strandat 433.603 kb on + strandat 433.603 kb on + strandat 433.604 kb on - strandat 433.604 kb on - strandat 433.604 kb on - strandat 433.638 kb on + strandat 433.638 kb on + strandat 433.638 kb on + strandat 433.639 kb on - strandat 433.639 kb on - strandat 433.683 kb on + strand, within GFF2379at 433.683 kb on + strand, within GFF2379at 433.759 kb on - strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.866 kb on + strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.867 kb on - strand, within GFF2379at 433.881 kb on + strand, within GFF2379at 433.881 kb on + strand, within GFF2379at 433.881 kb on + strand, within GFF2379at 433.881 kb on + strand, within GFF2379at 433.881 kb on + strand, within GFF2379at 433.882 kb on - strand, within GFF2379at 433.882 kb on - strand, within GFF2379at 433.882 kb on - strand, within GFF2379at 434.013 kb on + strand, within GFF2379at 434.013 kb on + strand, within GFF2379at 434.013 kb on + strand, within GFF2379at 434.014 kb on - strand, within GFF2379at 434.014 kb on - strand, within GFF2379at 434.014 kb on - strand, within GFF2379at 434.014 kb on - strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.142 kb on + strand, within GFF2379at 434.143 kb on - strand, within GFF2379at 434.143 kb on - strand, within GFF2379at 434.143 kb on - strand, within GFF2379at 434.143 kb on - strand, within GFF2379at 434.172 kb on + strand, within GFF2379at 434.172 kb on + strand, within GFF2379at 434.172 kb on + strand, within GFF2379at 434.173 kb on - strand, within GFF2379at 434.173 kb on - strand, within GFF2379at 434.211 kb on + strand, within GFF2379at 434.211 kb on + strand, within GFF2379at 434.211 kb on + strand, within GFF2379at 434.211 kb on + strand, within GFF2379at 434.211 kb on + strand, within GFF2379at 434.211 kb on + strand, within GFF2379at 434.211 kb on + strand, within GFF2379at 434.211 kb on + strand, within GFF2379at 434.211 kb on + strand, within GFF2379at 434.211 kb on + strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.212 kb on - strand, within GFF2379at 434.232 kb on + strand, within GFF2379at 434.232 kb on + strand, within GFF2379at 434.232 kb on + strand, within GFF2379at 434.232 kb on + strand, within GFF2379at 434.232 kb on + strand, within GFF2379at 434.233 kb on - strand, within GFF2379at 434.233 kb on - strand, within GFF2379at 434.233 kb on - strand, within GFF2379at 434.233 kb on - strand, within GFF2379at 434.233 kb on - strand, within GFF2379at 434.325 kb on + strand, within GFF2379at 434.325 kb on + strand, within GFF2379at 434.325 kb on + strand, within GFF2379at 434.325 kb on + strand, within GFF2379at 434.326 kb on - strand, within GFF2379at 434.326 kb on - strand, within GFF2379at 434.326 kb on - strand, within GFF2379at 434.440 kb on - strand, within GFF2379at 434.440 kb on - strand, within GFF2379at 434.623 kb on + strandat 434.623 kb on + strandat 434.624 kb on - strandat 434.624 kb on - strandat 434.624 kb on - strandat 434.629 kb on + strandat 434.629 kb on + strandat 434.629 kb on + strandat 434.629 kb on + strandat 434.630 kb on - strandat 434.630 kb on - strandat 434.630 kb on - strandat 434.630 kb on - strandat 434.630 kb on - strandat 434.630 kb on - strandat 434.630 kb on - strandat 434.630 kb on - strandat 434.732 kb on - strand, within GFF2380at 434.818 kb on + strand, within GFF2380at 434.923 kb on + strand, within GFF2380at 434.923 kb on + strand, within GFF2380at 434.923 kb on + strand, within GFF2380at 434.923 kb on + strand, within GFF2380at 434.923 kb on + strand, within GFF2380at 434.924 kb on - strand, within GFF2380at 434.924 kb on - strand, within GFF2380at 434.924 kb on - strand, within GFF2380at 434.924 kb on - strand, within GFF2380

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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432,587 + +0.5
432,588 - -0.5
433,541 + -2.0
433,594 - +3.1
433,603 + +3.2
433,603 + +3.2
433,603 + +3.7
433,603 + +3.4
433,603 + +3.4
433,604 - +1.8
433,604 - +2.8
433,604 - +3.0
433,638 + +3.6
433,638 + +2.7
433,638 + +3.3
433,639 - +3.3
433,639 - +3.3
433,683 + GFF2379 0.14 +3.2
433,683 + GFF2379 0.14 +3.0
433,759 - GFF2379 0.22 +3.2
433,866 + GFF2379 0.32 +3.2
433,866 + GFF2379 0.32 +3.0
433,866 + GFF2379 0.32 +3.0
433,866 + GFF2379 0.32 +3.2
433,866 + GFF2379 0.32 +3.2
433,866 + GFF2379 0.32 +3.4
433,866 + GFF2379 0.32 +2.4
433,866 + GFF2379 0.32 +2.8
433,866 + GFF2379 0.32 +3.4
433,866 + GFF2379 0.32 +3.7
433,866 + GFF2379 0.32 +3.2
433,866 + GFF2379 0.32 +4.3
433,866 + GFF2379 0.32 +2.7
433,866 + GFF2379 0.32 +3.4
433,866 + GFF2379 0.32 +3.4
433,866 + GFF2379 0.32 +3.6
433,866 + GFF2379 0.32 +3.3
433,866 + GFF2379 0.32 +3.3
433,867 - GFF2379 0.32 +4.4
433,867 - GFF2379 0.32 +3.5
433,867 - GFF2379 0.32 +3.2
433,867 - GFF2379 0.32 +3.3
433,867 - GFF2379 0.32 +3.2
433,867 - GFF2379 0.32 +2.7
433,867 - GFF2379 0.32 +3.0
433,867 - GFF2379 0.32 +2.9
433,867 - GFF2379 0.32 +3.4
433,867 - GFF2379 0.32 +3.0
433,867 - GFF2379 0.32 +2.7
433,867 - GFF2379 0.32 +2.9
433,867 - GFF2379 0.32 +3.1
433,881 + GFF2379 0.34 +3.9
433,881 + GFF2379 0.34 +3.4
433,881 + GFF2379 0.34 +3.3
433,881 + GFF2379 0.34 +3.5
433,881 + GFF2379 0.34 +3.0
433,882 - GFF2379 0.34 +3.2
433,882 - GFF2379 0.34 +3.4
433,882 - GFF2379 0.34 +3.2
434,013 + GFF2379 0.47 +3.1
434,013 + GFF2379 0.47 +3.5
434,013 + GFF2379 0.47 +3.1
434,014 - GFF2379 0.47 +2.7
434,014 - GFF2379 0.47 +2.5
434,014 - GFF2379 0.47 +2.8
434,014 - GFF2379 0.47 +3.4
434,142 + GFF2379 0.60 +3.2
434,142 + GFF2379 0.60 +3.3
434,142 + GFF2379 0.60 +3.5
434,142 + GFF2379 0.60 +2.3
434,142 + GFF2379 0.60 +3.1
434,142 + GFF2379 0.60 +3.3
434,142 + GFF2379 0.60 +3.1
434,142 + GFF2379 0.60 +4.4
434,142 + GFF2379 0.60 +3.4
434,142 + GFF2379 0.60 +3.4
434,142 + GFF2379 0.60 +3.0
434,142 + GFF2379 0.60 +2.9
434,143 - GFF2379 0.60 +2.7
434,143 - GFF2379 0.60 +3.3
434,143 - GFF2379 0.60 +2.9
434,143 - GFF2379 0.60 +3.5
434,172 + GFF2379 0.62 +2.9
434,172 + GFF2379 0.62 +3.2
434,172 + GFF2379 0.62 +3.0
434,173 - GFF2379 0.63 +3.5
434,173 - GFF2379 0.63 +2.6
434,211 + GFF2379 0.66 +3.6
434,211 + GFF2379 0.66 +4.1
434,211 + GFF2379 0.66 +3.7
434,211 + GFF2379 0.66 +2.9
434,211 + GFF2379 0.66 +3.0
434,211 + GFF2379 0.66 +3.5
434,211 + GFF2379 0.66 +3.5
434,211 + GFF2379 0.66 +2.5
434,211 + GFF2379 0.66 +3.5
434,211 + GFF2379 0.66 +3.5
434,212 - GFF2379 0.66 +2.7
434,212 - GFF2379 0.66 +3.0
434,212 - GFF2379 0.66 +3.2
434,212 - GFF2379 0.66 +4.0
434,212 - GFF2379 0.66 +3.6
434,212 - GFF2379 0.66 +3.2
434,212 - GFF2379 0.66 +3.5
434,212 - GFF2379 0.66 +3.0
434,212 - GFF2379 0.66 +3.3
434,212 - GFF2379 0.66 +3.5
434,212 - GFF2379 0.66 +3.1
434,212 - GFF2379 0.66 +3.4
434,212 - GFF2379 0.66 +3.3
434,232 + GFF2379 0.68 +3.2
434,232 + GFF2379 0.68 +3.7
434,232 + GFF2379 0.68 +3.2
434,232 + GFF2379 0.68 +3.5
434,232 + GFF2379 0.68 +3.5
434,233 - GFF2379 0.69 +2.9
434,233 - GFF2379 0.69 +3.9
434,233 - GFF2379 0.69 +3.1
434,233 - GFF2379 0.69 +2.9
434,233 - GFF2379 0.69 +2.5
434,325 + GFF2379 0.78 +3.5
434,325 + GFF2379 0.78 +2.6
434,325 + GFF2379 0.78 +3.0
434,325 + GFF2379 0.78 +4.1
434,326 - GFF2379 0.78 +4.0
434,326 - GFF2379 0.78 +3.5
434,326 - GFF2379 0.78 +2.6
434,440 - GFF2379 0.89 +4.0
434,440 - GFF2379 0.89 +2.1
434,623 + -1.3
434,623 + +0.0
434,624 - +0.4
434,624 - -0.8
434,624 - -1.3
434,629 + -0.7
434,629 + -0.5
434,629 + -1.3
434,629 + -1.1
434,630 - -0.1
434,630 - -0.3
434,630 - -1.1
434,630 - -1.4
434,630 - +2.9
434,630 - -1.6
434,630 - -1.4
434,630 - +0.3
434,732 - GFF2380 0.19 -0.8
434,818 + GFF2380 0.29 -1.7
434,923 + GFF2380 0.40 -0.4
434,923 + GFF2380 0.40 -0.9
434,923 + GFF2380 0.40 -2.2
434,923 + GFF2380 0.40 +1.1
434,923 + GFF2380 0.40 -2.1
434,924 - GFF2380 0.40 +1.4
434,924 - GFF2380 0.40 +0.1
434,924 - GFF2380 0.40 -1.1
434,924 - GFF2380 0.40 +0.3

Or see this region's nucleotide sequence