Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2367 and GFF2368 are separated by 15 nucleotides GFF2368 and GFF2369 are separated by 23 nucleotides GFF2369 and GFF2370 are separated by 3 nucleotides
GFF2367 - Transcriptional regulator, LysR family, at 421,398 to 422,333
GFF2367
GFF2368 - ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate), at 422,349 to 423,314
GFF2368
GFF2369 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 423,338 to 424,213
GFF2369
GFF2370 - L-carnitine dehydratase/bile acid-inducible protein F, at 424,217 to 425,422
GFF2370
Position (kb) 422
423
424 Strain fitness (log2 ratio) -1
0
1
2 at 421.362 kb on + strand at 421.608 kb on + strand, within GFF2367 at 422.206 kb on + strand, within GFF2367 at 422.206 kb on + strand, within GFF2367 at 422.207 kb on - strand, within GFF2367 at 422.207 kb on - strand, within GFF2367 at 422.397 kb on + strand at 422.397 kb on + strand at 422.397 kb on + strand at 422.398 kb on - strand at 422.518 kb on - strand, within GFF2368 at 422.686 kb on + strand, within GFF2368 at 422.686 kb on + strand, within GFF2368 at 422.770 kb on + strand, within GFF2368 at 422.771 kb on - strand, within GFF2368 at 422.771 kb on - strand, within GFF2368 at 422.915 kb on - strand, within GFF2368 at 423.043 kb on + strand, within GFF2368 at 423.055 kb on + strand, within GFF2368 at 423.056 kb on - strand, within GFF2368 at 423.205 kb on + strand, within GFF2368 at 423.546 kb on + strand, within GFF2369 at 423.546 kb on + strand, within GFF2369 at 423.579 kb on + strand, within GFF2369 at 423.844 kb on - strand, within GFF2369 at 424.033 kb on + strand, within GFF2369 at 424.054 kb on - strand, within GFF2369 at 424.120 kb on - strand, within GFF2369 at 424.120 kb on - strand, within GFF2369
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 421,362 + -0.1 421,608 + GFF2367 0.22 -0.3 422,206 + GFF2367 0.86 -0.3 422,206 + GFF2367 0.86 +1.9 422,207 - GFF2367 0.86 +0.3 422,207 - GFF2367 0.86 +0.3 422,397 + -0.9 422,397 + -0.6 422,397 + -0.1 422,398 - -0.7 422,518 - GFF2368 0.17 -0.4 422,686 + GFF2368 0.35 +0.5 422,686 + GFF2368 0.35 +1.0 422,770 + GFF2368 0.44 +0.0 422,771 - GFF2368 0.44 -0.0 422,771 - GFF2368 0.44 +0.3 422,915 - GFF2368 0.59 +0.2 423,043 + GFF2368 0.72 -0.1 423,055 + GFF2368 0.73 -0.2 423,056 - GFF2368 0.73 -0.9 423,205 + GFF2368 0.89 -0.4 423,546 + GFF2369 0.24 -0.8 423,546 + GFF2369 0.24 +0.1 423,579 + GFF2369 0.28 +1.6 423,844 - GFF2369 0.58 -1.0 424,033 + GFF2369 0.79 +0.6 424,054 - GFF2369 0.82 +0.0 424,120 - GFF2369 0.89 -0.2 424,120 - GFF2369 0.89 +0.9
Or see this region's nucleotide sequence