Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2352 and GFF2353 are separated by 81 nucleotides GFF2353 and GFF2354 are separated by 89 nucleotides GFF2354 and GFF2355 are separated by 28 nucleotides
GFF2352 - FIG140336: TPR domain protein, at 401,589 to 403,442
GFF2352
GFF2353 - Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23), at 403,524 to 404,336
GFF2353
GFF2354 - FIG00555615: hypothetical protein, at 404,426 to 406,387
GFF2354
GFF2355 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 406,416 to 407,462
GFF2355
Position (kb) 404
405
406
407 Strain fitness (log2 ratio) -2
-1
0
1
2 at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.517 kb on - strand at 403.534 kb on + strand at 403.600 kb on + strand at 403.692 kb on + strand, within GFF2353 at 403.692 kb on + strand, within GFF2353 at 403.692 kb on + strand, within GFF2353 at 403.692 kb on + strand, within GFF2353 at 403.693 kb on - strand, within GFF2353 at 403.693 kb on - strand, within GFF2353 at 403.693 kb on - strand, within GFF2353 at 403.693 kb on - strand, within GFF2353 at 403.863 kb on + strand, within GFF2353 at 403.863 kb on + strand, within GFF2353 at 403.864 kb on - strand, within GFF2353 at 403.864 kb on - strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.212 kb on - strand, within GFF2353 at 404.212 kb on - strand, within GFF2353 at 404.212 kb on - strand, within GFF2353 at 404.212 kb on - strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.334 kb on + strand at 404.335 kb on - strand at 404.359 kb on + strand at 404.360 kb on - strand at 404.360 kb on - strand at 404.360 kb on - strand at 404.395 kb on - strand at 404.395 kb on - strand at 404.397 kb on - strand at 404.663 kb on + strand, within GFF2354 at 404.664 kb on - strand, within GFF2354 at 404.726 kb on + strand, within GFF2354 at 404.727 kb on - strand, within GFF2354 at 405.625 kb on + strand, within GFF2354 at 405.626 kb on - strand, within GFF2354 at 405.626 kb on - strand, within GFF2354 at 405.626 kb on - strand, within GFF2354 at 405.725 kb on + strand, within GFF2354 at 405.725 kb on + strand, within GFF2354 at 405.725 kb on + strand, within GFF2354 at 405.725 kb on + strand, within GFF2354 at 405.725 kb on + strand, within GFF2354 at 405.726 kb on - strand, within GFF2354 at 405.726 kb on - strand, within GFF2354 at 405.726 kb on - strand, within GFF2354 at 405.726 kb on - strand, within GFF2354 at 405.726 kb on - strand, within GFF2354 at 405.726 kb on - strand, within GFF2354 at 405.821 kb on + strand, within GFF2354 at 405.821 kb on + strand, within GFF2354 at 405.821 kb on + strand, within GFF2354 at 405.821 kb on + strand, within GFF2354 at 405.821 kb on + strand, within GFF2354 at 405.822 kb on - strand, within GFF2354 at 405.822 kb on - strand, within GFF2354 at 406.016 kb on + strand, within GFF2354 at 406.016 kb on + strand, within GFF2354 at 406.017 kb on - strand, within GFF2354 at 406.017 kb on - strand, within GFF2354 at 406.017 kb on - strand, within GFF2354 at 406.017 kb on - strand, within GFF2354 at 406.017 kb on - strand, within GFF2354 at 406.569 kb on + strand, within GFF2355 at 406.570 kb on - strand, within GFF2355 at 406.662 kb on + strand, within GFF2355 at 406.662 kb on + strand, within GFF2355 at 406.662 kb on + strand, within GFF2355 at 406.665 kb on + strand, within GFF2355 at 406.665 kb on + strand, within GFF2355 at 406.665 kb on + strand, within GFF2355 at 406.666 kb on - strand, within GFF2355 at 406.968 kb on + strand, within GFF2355 at 406.968 kb on + strand, within GFF2355 at 406.968 kb on + strand, within GFF2355 at 406.968 kb on + strand, within GFF2355 at 406.968 kb on + strand, within GFF2355 at 406.969 kb on - strand, within GFF2355 at 406.969 kb on - strand, within GFF2355 at 406.969 kb on - strand, within GFF2355
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 403,453 + -0.5 403,453 + -0.4 403,453 + -0.1 403,453 + -0.9 403,453 + -0.2 403,453 + -1.6 403,453 + +0.1 403,453 + +0.1 403,454 - -0.8 403,454 - +0.7 403,454 - -0.7 403,454 - +1.9 403,454 - -0.7 403,454 - +0.4 403,454 - +0.0 403,454 - -0.9 403,454 - -0.1 403,454 - -0.7 403,454 - +0.3 403,454 - -0.4 403,454 - +0.1 403,454 - -0.9 403,454 - +0.4 403,517 - -0.7 403,534 + -1.1 403,600 + -0.9 403,692 + GFF2353 0.21 -0.6 403,692 + GFF2353 0.21 -0.4 403,692 + GFF2353 0.21 -0.1 403,692 + GFF2353 0.21 -0.8 403,693 - GFF2353 0.21 -2.0 403,693 - GFF2353 0.21 +0.0 403,693 - GFF2353 0.21 +0.9 403,693 - GFF2353 0.21 -1.2 403,863 + GFF2353 0.42 +0.3 403,863 + GFF2353 0.42 -0.4 403,864 - GFF2353 0.42 -1.0 403,864 - GFF2353 0.42 -0.1 404,037 + GFF2353 0.63 -0.6 404,037 + GFF2353 0.63 +0.0 404,037 + GFF2353 0.63 -0.3 404,037 + GFF2353 0.63 -0.1 404,037 + GFF2353 0.63 -0.1 404,037 + GFF2353 0.63 +0.6 404,037 + GFF2353 0.63 -0.2 404,037 + GFF2353 0.63 -0.1 404,037 + GFF2353 0.63 +0.8 404,037 + GFF2353 0.63 -0.4 404,037 + GFF2353 0.63 +0.9 404,037 + GFF2353 0.63 +0.3 404,037 + GFF2353 0.63 +0.4 404,037 + GFF2353 0.63 -0.6 404,037 + GFF2353 0.63 +0.4 404,037 + GFF2353 0.63 -0.5 404,037 + GFF2353 0.63 +1.0 404,037 + GFF2353 0.63 +1.0 404,038 - GFF2353 0.63 -1.5 404,038 - GFF2353 0.63 -0.6 404,038 - GFF2353 0.63 -0.4 404,038 - GFF2353 0.63 +0.3 404,038 - GFF2353 0.63 -0.3 404,038 - GFF2353 0.63 -1.4 404,038 - GFF2353 0.63 -0.6 404,038 - GFF2353 0.63 -1.8 404,038 - GFF2353 0.63 -0.4 404,038 - GFF2353 0.63 -0.2 404,038 - GFF2353 0.63 -0.4 404,038 - GFF2353 0.63 +0.1 404,038 - GFF2353 0.63 +0.1 404,038 - GFF2353 0.63 -0.1 404,038 - GFF2353 0.63 -0.3 404,038 - GFF2353 0.63 -0.1 404,038 - GFF2353 0.63 +0.2 404,038 - GFF2353 0.63 -0.4 404,038 - GFF2353 0.63 +0.1 404,038 - GFF2353 0.63 -0.1 404,038 - GFF2353 0.63 +0.4 404,038 - GFF2353 0.63 +0.4 404,038 - GFF2353 0.63 -1.5 404,212 - GFF2353 0.85 +0.0 404,212 - GFF2353 0.85 -1.4 404,212 - GFF2353 0.85 -0.5 404,212 - GFF2353 0.85 -2.4 404,235 + GFF2353 0.87 -0.7 404,235 + GFF2353 0.87 +0.3 404,235 + GFF2353 0.87 -0.7 404,235 + GFF2353 0.87 -0.4 404,235 + GFF2353 0.87 -0.3 404,235 + GFF2353 0.87 -0.7 404,235 + GFF2353 0.87 -0.3 404,235 + GFF2353 0.87 -1.0 404,235 + GFF2353 0.87 +0.3 404,235 + GFF2353 0.87 -0.8 404,235 + GFF2353 0.87 -0.3 404,235 + GFF2353 0.87 -0.5 404,236 - GFF2353 0.88 -0.1 404,236 - GFF2353 0.88 -0.3 404,236 - GFF2353 0.88 +0.9 404,236 - GFF2353 0.88 +1.3 404,236 - GFF2353 0.88 -0.9 404,236 - GFF2353 0.88 -1.0 404,236 - GFF2353 0.88 -0.3 404,236 - GFF2353 0.88 +0.5 404,236 - GFF2353 0.88 +0.5 404,310 + +1.9 404,310 + +0.1 404,310 + -0.6 404,310 + +0.2 404,310 + +0.1 404,310 + +0.1 404,310 + -0.4 404,310 + -0.4 404,310 + -0.5 404,310 + -0.9 404,310 + -0.6 404,310 + -0.5 404,310 + -1.5 404,310 + +0.2 404,310 + +0.3 404,310 + -0.1 404,310 + -0.4 404,310 + -0.6 404,310 + -1.0 404,310 + -0.9 404,310 + -0.0 404,310 + +1.3 404,310 + +0.9 404,310 + -0.8 404,311 - -0.7 404,311 - -1.9 404,311 - -1.9 404,311 - -1.9 404,311 - -1.3 404,311 - +1.2 404,311 - -0.1 404,311 - -1.0 404,311 - -0.1 404,311 - +0.2 404,311 - -1.4 404,311 - +1.1 404,311 - +0.3 404,311 - -1.4 404,311 - -0.3 404,311 - +0.9 404,311 - +0.3 404,311 - -0.4 404,311 - -1.8 404,311 - -1.3 404,311 - +0.0 404,311 - -0.4 404,311 - -1.2 404,311 - +0.9 404,311 - -1.0 404,311 - +0.3 404,311 - +0.3 404,311 - +0.4 404,311 - +1.0 404,311 - +0.6 404,311 - +0.3 404,311 - -1.1 404,311 - -1.1 404,311 - -1.2 404,311 - +0.6 404,311 - +0.1 404,311 - -0.5 404,311 - -2.1 404,311 - +0.9 404,311 - -0.2 404,311 - -0.8 404,311 - +0.3 404,311 - -1.0 404,311 - -0.6 404,311 - -0.7 404,313 + -0.2 404,313 + -0.4 404,313 + -0.8 404,313 + -0.1 404,313 + -0.8 404,313 + -0.3 404,313 + +0.3 404,313 + +1.9 404,313 + +0.2 404,313 + -0.2 404,314 - +0.1 404,314 - -0.1 404,314 - -0.5 404,314 - -0.0 404,314 - -1.4 404,314 - -0.0 404,314 - +0.9 404,314 - -0.6 404,334 + +0.2 404,335 - -0.6 404,359 + +1.1 404,360 - -0.0 404,360 - -0.3 404,360 - -0.4 404,395 - +0.7 404,395 - -0.1 404,397 - -1.3 404,663 + GFF2354 0.12 -0.0 404,664 - GFF2354 0.12 -0.2 404,726 + GFF2354 0.15 -2.4 404,727 - GFF2354 0.15 -0.3 405,625 + GFF2354 0.61 -1.7 405,626 - GFF2354 0.61 -0.4 405,626 - GFF2354 0.61 -1.6 405,626 - GFF2354 0.61 -1.3 405,725 + GFF2354 0.66 -2.0 405,725 + GFF2354 0.66 -0.3 405,725 + GFF2354 0.66 -0.8 405,725 + GFF2354 0.66 -0.9 405,725 + GFF2354 0.66 -1.2 405,726 - GFF2354 0.66 -0.1 405,726 - GFF2354 0.66 -1.1 405,726 - GFF2354 0.66 -2.0 405,726 - GFF2354 0.66 +0.1 405,726 - GFF2354 0.66 -0.9 405,726 - GFF2354 0.66 -0.4 405,821 + GFF2354 0.71 -1.7 405,821 + GFF2354 0.71 -0.4 405,821 + GFF2354 0.71 -2.0 405,821 + GFF2354 0.71 -2.5 405,821 + GFF2354 0.71 -1.4 405,822 - GFF2354 0.71 -1.0 405,822 - GFF2354 0.71 -2.6 406,016 + GFF2354 0.81 -1.6 406,016 + GFF2354 0.81 -2.5 406,017 - GFF2354 0.81 -0.6 406,017 - GFF2354 0.81 -0.4 406,017 - GFF2354 0.81 -2.6 406,017 - GFF2354 0.81 -1.1 406,017 - GFF2354 0.81 -1.8 406,569 + GFF2355 0.15 +0.4 406,570 - GFF2355 0.15 -0.2 406,662 + GFF2355 0.23 -0.9 406,662 + GFF2355 0.23 +0.1 406,662 + GFF2355 0.23 -0.9 406,665 + GFF2355 0.24 +0.9 406,665 + GFF2355 0.24 -0.1 406,665 + GFF2355 0.24 +0.6 406,666 - GFF2355 0.24 -0.2 406,968 + GFF2355 0.53 -1.6 406,968 + GFF2355 0.53 -0.8 406,968 + GFF2355 0.53 -0.5 406,968 + GFF2355 0.53 +0.0 406,968 + GFF2355 0.53 -0.2 406,969 - GFF2355 0.53 -0.5 406,969 - GFF2355 0.53 +0.5 406,969 - GFF2355 0.53 -0.9
Or see this region's nucleotide sequence