Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2325 and GFF2326 are separated by 285 nucleotides GFF2326 and GFF2327 are separated by 0 nucleotides GFF2327 and GFF2328 are separated by 51 nucleotides
GFF2325 - Methyl-accepting chemotaxis sensor/transducer protein, at 375,846 to 377,537
GFF2325
GFF2326 - Transcriptional regulator, LysR family, at 377,823 to 378,725
GFF2326
GFF2327 - Hydrolase, alpha/beta fold family, at 378,726 to 379,493
GFF2327
GFF2328 - no description, at 379,545 to 380,186
GFF2328
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 377.068 kb on + strand, within GFF2325 at 377.170 kb on + strand, within GFF2325 at 377.242 kb on - strand, within GFF2325 at 377.242 kb on - strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.365 kb on + strand, within GFF2325 at 377.437 kb on + strand at 377.437 kb on + strand at 377.437 kb on + strand at 377.438 kb on - strand at 377.438 kb on - strand at 377.540 kb on + strand at 377.540 kb on + strand at 377.541 kb on - strand at 377.602 kb on + strand at 377.603 kb on - strand at 377.603 kb on - strand at 377.622 kb on - strand at 377.649 kb on - strand at 377.666 kb on + strand at 377.666 kb on + strand at 377.667 kb on - strand at 377.673 kb on + strand at 377.677 kb on + strand at 377.678 kb on - strand at 377.773 kb on + strand at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.331 kb on - strand, within GFF2326 at 378.603 kb on + strand, within GFF2326 at 378.637 kb on - strand at 379.016 kb on - strand, within GFF2327 at 379.017 kb on - strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.112 kb on - strand, within GFF2327 at 379.419 kb on + strand at 379.419 kb on + strand at 379.419 kb on + strand at 379.471 kb on + strand at 379.471 kb on + strand at 379.471 kb on + strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.513 kb on - strand at 379.638 kb on + strand, within GFF2328 at 379.648 kb on - strand, within GFF2328 at 379.648 kb on - strand, within GFF2328 at 379.648 kb on - strand, within GFF2328
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 377,068 + GFF2325 0.72 +0.0 377,170 + GFF2325 0.78 +0.3 377,242 - GFF2325 0.83 +0.3 377,242 - GFF2325 0.83 +0.4 377,342 + GFF2325 0.88 +0.4 377,342 + GFF2325 0.88 -0.4 377,342 + GFF2325 0.88 -0.2 377,342 + GFF2325 0.88 -0.2 377,343 - GFF2325 0.88 -0.2 377,343 - GFF2325 0.88 -0.7 377,343 - GFF2325 0.88 -0.1 377,343 - GFF2325 0.88 -1.1 377,365 + GFF2325 0.90 -0.4 377,437 + -1.1 377,437 + +0.6 377,437 + +0.3 377,438 - -0.3 377,438 - +0.0 377,540 + -0.2 377,540 + +0.4 377,541 - -0.5 377,602 + -2.9 377,603 - -0.8 377,603 - -0.4 377,622 - -0.3 377,649 - +0.3 377,666 + +2.5 377,666 + +0.9 377,667 - +0.7 377,673 + -0.0 377,677 + -0.7 377,678 - -0.2 377,773 + -0.0 378,330 + GFF2326 0.56 -0.2 378,330 + GFF2326 0.56 -0.5 378,330 + GFF2326 0.56 -0.7 378,330 + GFF2326 0.56 -2.9 378,331 - GFF2326 0.56 -1.4 378,603 + GFF2326 0.86 -2.1 378,637 - -0.6 379,016 - GFF2327 0.38 -0.4 379,017 - GFF2327 0.38 -2.1 379,066 + GFF2327 0.44 +0.4 379,066 + GFF2327 0.44 +0.4 379,066 + GFF2327 0.44 +0.1 379,112 - GFF2327 0.50 -0.3 379,419 + +0.5 379,419 + +0.1 379,419 + -0.0 379,471 + -0.9 379,471 + -0.8 379,471 + -0.8 379,472 - -0.4 379,472 - -0.5 379,472 - -0.1 379,472 - -0.3 379,512 + -0.5 379,512 + -0.2 379,512 + -1.7 379,512 + +0.3 379,512 + -0.7 379,513 - -0.1 379,638 + GFF2328 0.14 +0.4 379,648 - GFF2328 0.16 +0.3 379,648 - GFF2328 0.16 -0.9 379,648 - GFF2328 0.16 -0.4
Or see this region's nucleotide sequence