Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2289 and GFF2290 are separated by 111 nucleotides GFF2290 and GFF2291 are separated by 81 nucleotides GFF2291 and GFF2292 are separated by 16 nucleotides GFF2292 and GFF2293 are separated by 136 nucleotides GFF2293 and GFF2294 are separated by 31 nucleotides
GFF2289 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 345,207 to 345,914
GFF2289
GFF2290 - Chromosome partitioning protein ParA, at 346,026 to 346,646
GFF2290
GFF2291 - Nodulation protein N-related dehydratase, at 346,728 to 347,189
GFF2291
GFF2292 - hypothetical protein, at 347,206 to 347,499
GFF2292
GFF2293 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 347,636 to 348,097
GFF2293
GFF2294 - Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy, at 348,129 to 348,854
GFF2294
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 345.773 kb on - strand, within GFF2289 at 345.773 kb on - strand, within GFF2289 at 345.773 kb on - strand, within GFF2289 at 345.773 kb on - strand, within GFF2289 at 345.781 kb on + strand, within GFF2289 at 345.781 kb on + strand, within GFF2289 at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.989 kb on + strand at 345.990 kb on - strand at 346.025 kb on + strand at 346.025 kb on + strand at 346.026 kb on - strand at 346.363 kb on + strand, within GFF2290 at 346.365 kb on + strand, within GFF2290 at 346.365 kb on + strand, within GFF2290 at 346.365 kb on + strand, within GFF2290 at 346.365 kb on + strand, within GFF2290 at 346.365 kb on + strand, within GFF2290 at 346.365 kb on + strand, within GFF2290 at 346.365 kb on + strand, within GFF2290 at 346.365 kb on + strand, within GFF2290 at 346.366 kb on - strand, within GFF2290 at 346.366 kb on - strand, within GFF2290 at 346.366 kb on - strand, within GFF2290 at 346.366 kb on - strand, within GFF2290 at 346.366 kb on - strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.539 kb on + strand, within GFF2290 at 346.540 kb on - strand, within GFF2290 at 346.540 kb on - strand, within GFF2290 at 346.540 kb on - strand, within GFF2290 at 346.540 kb on - strand, within GFF2290 at 346.540 kb on - strand, within GFF2290 at 346.540 kb on - strand, within GFF2290 at 346.540 kb on - strand, within GFF2290 at 346.540 kb on - strand, within GFF2290 at 346.540 kb on - strand, within GFF2290 at 346.540 kb on - strand, within GFF2290 at 346.540 kb on - strand, within GFF2290 at 346.998 kb on + strand, within GFF2291 at 346.998 kb on + strand, within GFF2291 at 346.998 kb on + strand, within GFF2291 at 346.999 kb on - strand, within GFF2291 at 346.999 kb on - strand, within GFF2291 at 346.999 kb on - strand, within GFF2291 at 347.042 kb on + strand, within GFF2291 at 347.207 kb on + strand at 347.207 kb on + strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.234 kb on + strand at 347.234 kb on + strand at 347.235 kb on - strand at 347.235 kb on - strand at 347.946 kb on + strand, within GFF2293 at 347.946 kb on + strand, within GFF2293 at 347.946 kb on + strand, within GFF2293 at 347.946 kb on + strand, within GFF2293 at 347.947 kb on - strand, within GFF2293 at 347.947 kb on - strand, within GFF2293 at 348.041 kb on + strand, within GFF2293 at 348.041 kb on + strand, within GFF2293 at 348.041 kb on + strand, within GFF2293 at 348.041 kb on + strand, within GFF2293 at 348.042 kb on - strand, within GFF2293 at 348.171 kb on - strand at 348.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 345,773 - GFF2289 0.80 -1.1 345,773 - GFF2289 0.80 -1.5 345,773 - GFF2289 0.80 +0.4 345,773 - GFF2289 0.80 +0.9 345,781 + GFF2289 0.81 +0.6 345,781 + GFF2289 0.81 -0.5 345,880 + +0.0 345,880 + -0.6 345,880 + +3.7 345,880 + -1.4 345,880 + -0.1 345,880 + +0.1 345,880 + -0.5 345,881 - -0.3 345,881 - +1.7 345,881 - -0.3 345,881 - +0.3 345,881 - +0.4 345,944 + -0.1 345,944 + -0.5 345,944 + -1.0 345,944 + -0.1 345,944 + +0.9 345,944 + -0.2 345,944 + -0.4 345,944 + +0.6 345,944 + +0.3 345,944 + -0.3 345,944 + +0.2 345,944 + -1.2 345,945 - +0.0 345,945 - +0.8 345,945 - -0.7 345,945 - -0.6 345,945 - -0.3 345,945 - -0.6 345,945 - -0.8 345,945 - -0.8 345,945 - -0.7 345,945 - -0.1 345,945 - -0.0 345,945 - -0.3 345,989 + -0.4 345,990 - +0.1 346,025 + -0.2 346,025 + -0.4 346,026 - +0.3 346,363 + GFF2290 0.54 -0.5 346,365 + GFF2290 0.55 +0.7 346,365 + GFF2290 0.55 -0.1 346,365 + GFF2290 0.55 -2.1 346,365 + GFF2290 0.55 -0.6 346,365 + GFF2290 0.55 -1.4 346,365 + GFF2290 0.55 +0.3 346,365 + GFF2290 0.55 -1.1 346,365 + GFF2290 0.55 -0.8 346,366 - GFF2290 0.55 -0.3 346,366 - GFF2290 0.55 -0.4 346,366 - GFF2290 0.55 +0.1 346,366 - GFF2290 0.55 +0.5 346,366 - GFF2290 0.55 -1.0 346,539 + GFF2290 0.83 -1.1 346,539 + GFF2290 0.83 -0.5 346,539 + GFF2290 0.83 -0.8 346,539 + GFF2290 0.83 -0.3 346,539 + GFF2290 0.83 +0.9 346,539 + GFF2290 0.83 -1.6 346,539 + GFF2290 0.83 -0.8 346,539 + GFF2290 0.83 +0.2 346,539 + GFF2290 0.83 -0.9 346,539 + GFF2290 0.83 -0.3 346,539 + GFF2290 0.83 -0.4 346,539 + GFF2290 0.83 -0.5 346,540 - GFF2290 0.83 +0.5 346,540 - GFF2290 0.83 -0.8 346,540 - GFF2290 0.83 -0.4 346,540 - GFF2290 0.83 +0.6 346,540 - GFF2290 0.83 +1.3 346,540 - GFF2290 0.83 -0.1 346,540 - GFF2290 0.83 +1.9 346,540 - GFF2290 0.83 -0.4 346,540 - GFF2290 0.83 -0.1 346,540 - GFF2290 0.83 -0.1 346,540 - GFF2290 0.83 +0.9 346,998 + GFF2291 0.58 -0.7 346,998 + GFF2291 0.58 -1.5 346,998 + GFF2291 0.58 +0.9 346,999 - GFF2291 0.59 -2.0 346,999 - GFF2291 0.59 -0.8 346,999 - GFF2291 0.59 -0.5 347,042 + GFF2291 0.68 -0.7 347,207 + -0.1 347,207 + +1.2 347,208 - -0.1 347,208 - +0.3 347,208 - -0.9 347,208 - -1.1 347,208 - -0.3 347,208 - -2.1 347,208 - -0.4 347,208 - -0.3 347,208 - -0.2 347,208 - +0.1 347,208 - -0.4 347,208 - -1.4 347,234 + +1.6 347,234 + -0.6 347,235 - +0.2 347,235 - +0.1 347,946 + GFF2293 0.67 -1.0 347,946 + GFF2293 0.67 +0.3 347,946 + GFF2293 0.67 -0.7 347,946 + GFF2293 0.67 -1.5 347,947 - GFF2293 0.67 +0.4 347,947 - GFF2293 0.67 +0.9 348,041 + GFF2293 0.88 +0.0 348,041 + GFF2293 0.88 -0.9 348,041 + GFF2293 0.88 -0.1 348,041 + GFF2293 0.88 -1.3 348,042 - GFF2293 0.88 -0.9 348,171 - +0.6 348,171 - -0.2
Or see this region's nucleotide sequence