Strain Fitness in Variovorax sp. SCN45 around GFF2264

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2262 and GFF2263 are separated by 15 nucleotidesGFF2263 and GFF2264 are separated by 115 nucleotidesGFF2264 and GFF2265 are separated by 166 nucleotides GFF2262 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 318,094 to 318,822 GFF2262 GFF2263 - putative membrane protein, at 318,838 to 319,311 GFF2263 GFF2264 - Transcriptional regulator, LysR family, at 319,427 to 320,356 GFF2264 GFF2265 - Catechol 1,2-dioxygenase (EC 1.13.11.1), at 320,523 to 321,356 GFF2265 Position (kb) 319 320 321Strain fitness (log2 ratio) -2 -1 0 1 2 3at 318.917 kb on + strand, within GFF2263at 318.917 kb on + strand, within GFF2263at 318.917 kb on + strand, within GFF2263at 318.918 kb on - strand, within GFF2263at 318.918 kb on - strand, within GFF2263at 318.918 kb on - strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.094 kb on + strand, within GFF2263at 319.095 kb on - strand, within GFF2263at 319.398 kb on - strandat 319.398 kb on - strandat 319.398 kb on - strandat 319.464 kb on + strandat 319.464 kb on + strandat 319.465 kb on - strandat 319.465 kb on - strandat 319.621 kb on - strand, within GFF2264at 319.621 kb on - strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.914 kb on + strand, within GFF2264at 320.016 kb on + strand, within GFF2264at 320.016 kb on + strand, within GFF2264at 320.017 kb on - strand, within GFF2264at 320.017 kb on - strand, within GFF2264at 320.188 kb on - strand, within GFF2264at 320.483 kb on + strandat 320.484 kb on - strandat 320.688 kb on + strand, within GFF2265at 320.688 kb on + strand, within GFF2265at 320.688 kb on + strand, within GFF2265at 320.689 kb on - strand, within GFF2265at 320.689 kb on - strand, within GFF2265at 320.835 kb on + strand, within GFF2265at 320.835 kb on + strand, within GFF2265at 320.910 kb on + strand, within GFF2265at 320.910 kb on + strand, within GFF2265at 320.910 kb on + strand, within GFF2265at 320.910 kb on + strand, within GFF2265at 320.911 kb on - strand, within GFF2265at 320.911 kb on - strand, within GFF2265at 320.911 kb on - strand, within GFF2265at 320.991 kb on + strand, within GFF2265at 320.991 kb on + strand, within GFF2265at 320.992 kb on - strand, within GFF2265at 321.093 kb on + strand, within GFF2265at 321.195 kb on + strand, within GFF2265

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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318,917 + GFF2263 0.17 +0.9
318,917 + GFF2263 0.17 -1.0
318,917 + GFF2263 0.17 -0.3
318,918 - GFF2263 0.17 -1.1
318,918 - GFF2263 0.17 -1.2
318,918 - GFF2263 0.17 -0.2
319,085 + GFF2263 0.52 -1.1
319,085 + GFF2263 0.52 -0.2
319,085 + GFF2263 0.52 +0.1
319,085 + GFF2263 0.52 +1.2
319,085 + GFF2263 0.52 -0.4
319,085 + GFF2263 0.52 -0.4
319,085 + GFF2263 0.52 -1.9
319,085 + GFF2263 0.52 +0.2
319,085 + GFF2263 0.52 +1.1
319,085 + GFF2263 0.52 -0.4
319,086 - GFF2263 0.52 -0.3
319,086 - GFF2263 0.52 -0.2
319,086 - GFF2263 0.52 +0.1
319,086 - GFF2263 0.52 -0.1
319,086 - GFF2263 0.52 -0.7
319,086 - GFF2263 0.52 -1.4
319,086 - GFF2263 0.52 -0.6
319,086 - GFF2263 0.52 +0.1
319,086 - GFF2263 0.52 -0.1
319,086 - GFF2263 0.52 -0.7
319,094 + GFF2263 0.54 -0.8
319,095 - GFF2263 0.54 +0.6
319,398 - -0.9
319,398 - +3.5
319,398 - -1.1
319,464 + -0.5
319,464 + -0.7
319,465 - -0.1
319,465 - -2.4
319,621 - GFF2264 0.21 +0.2
319,621 - GFF2264 0.21 -0.9
319,629 + GFF2264 0.22 -0.5
319,629 + GFF2264 0.22 -0.4
319,629 + GFF2264 0.22 -0.9
319,629 + GFF2264 0.22 -0.1
319,629 + GFF2264 0.22 -0.2
319,629 + GFF2264 0.22 -0.1
319,630 - GFF2264 0.22 +0.2
319,630 - GFF2264 0.22 -0.4
319,630 - GFF2264 0.22 +1.9
319,630 - GFF2264 0.22 -0.4
319,630 - GFF2264 0.22 +0.1
319,630 - GFF2264 0.22 -0.8
319,630 - GFF2264 0.22 -0.1
319,630 - GFF2264 0.22 -1.5
319,630 - GFF2264 0.22 +1.4
319,630 - GFF2264 0.22 +0.6
319,779 + GFF2264 0.38 -0.3
319,779 + GFF2264 0.38 +0.3
319,779 + GFF2264 0.38 +1.9
319,779 + GFF2264 0.38 -1.8
319,780 - GFF2264 0.38 -0.2
319,780 - GFF2264 0.38 -1.3
319,780 - GFF2264 0.38 -0.7
319,780 - GFF2264 0.38 -1.4
319,780 - GFF2264 0.38 -0.1
319,780 - GFF2264 0.38 -1.4
319,780 - GFF2264 0.38 -1.4
319,914 + GFF2264 0.52 +1.3
320,016 + GFF2264 0.63 +0.5
320,016 + GFF2264 0.63 -0.1
320,017 - GFF2264 0.63 +0.3
320,017 - GFF2264 0.63 -0.6
320,188 - GFF2264 0.82 -0.2
320,483 + -0.3
320,484 - -0.5
320,688 + GFF2265 0.20 +0.3
320,688 + GFF2265 0.20 -1.0
320,688 + GFF2265 0.20 +0.5
320,689 - GFF2265 0.20 +0.3
320,689 - GFF2265 0.20 +0.9
320,835 + GFF2265 0.37 -0.4
320,835 + GFF2265 0.37 +0.4
320,910 + GFF2265 0.46 +0.3
320,910 + GFF2265 0.46 +0.9
320,910 + GFF2265 0.46 +1.1
320,910 + GFF2265 0.46 +0.4
320,911 - GFF2265 0.47 +0.1
320,911 - GFF2265 0.47 -0.3
320,911 - GFF2265 0.47 -0.4
320,991 + GFF2265 0.56 +0.5
320,991 + GFF2265 0.56 -1.2
320,992 - GFF2265 0.56 -0.3
321,093 + GFF2265 0.68 +0.2
321,195 + GFF2265 0.81 -0.9

Or see this region's nucleotide sequence