Strain Fitness in Variovorax sp. SCN45 around GFF2262

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2261 and GFF2262 are separated by 151 nucleotidesGFF2262 and GFF2263 are separated by 15 nucleotidesGFF2263 and GFF2264 are separated by 115 nucleotides GFF2261 - Adenylate cyclase (EC 4.6.1.1), at 316,365 to 317,942 GFF2261 GFF2262 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 318,094 to 318,822 GFF2262 GFF2263 - putative membrane protein, at 318,838 to 319,311 GFF2263 GFF2264 - Transcriptional regulator, LysR family, at 319,427 to 320,356 GFF2264 Position (kb) 318 319Strain fitness (log2 ratio) -2 -1 0 1 2 3at 317.339 kb on - strand, within GFF2261at 317.339 kb on - strand, within GFF2261at 317.638 kb on + strand, within GFF2261at 317.638 kb on + strand, within GFF2261at 317.638 kb on + strand, within GFF2261at 317.638 kb on + strand, within GFF2261at 317.639 kb on - strand, within GFF2261at 317.639 kb on - strand, within GFF2261at 317.639 kb on - strand, within GFF2261at 317.639 kb on - strand, within GFF2261at 317.639 kb on - strand, within GFF2261at 317.639 kb on - strand, within GFF2261at 317.639 kb on - strand, within GFF2261at 317.657 kb on - strand, within GFF2261at 317.657 kb on - strand, within GFF2261at 317.666 kb on - strand, within GFF2261at 317.818 kb on + strandat 317.896 kb on + strandat 317.896 kb on + strandat 317.896 kb on + strandat 317.896 kb on + strandat 317.896 kb on + strandat 317.896 kb on + strandat 317.897 kb on - strandat 317.897 kb on - strandat 317.935 kb on + strandat 317.935 kb on + strandat 317.935 kb on + strandat 317.935 kb on + strandat 317.935 kb on + strandat 317.935 kb on + strandat 317.936 kb on - strandat 317.936 kb on - strandat 317.936 kb on - strandat 317.936 kb on - strandat 318.054 kb on + strandat 318.054 kb on + strandat 318.054 kb on + strandat 318.055 kb on - strandat 318.113 kb on + strandat 318.113 kb on + strandat 318.114 kb on - strandat 318.298 kb on + strand, within GFF2262at 318.299 kb on - strand, within GFF2262at 318.917 kb on + strand, within GFF2263at 318.917 kb on + strand, within GFF2263at 318.917 kb on + strand, within GFF2263at 318.918 kb on - strand, within GFF2263at 318.918 kb on - strand, within GFF2263at 318.918 kb on - strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.085 kb on + strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.086 kb on - strand, within GFF2263at 319.094 kb on + strand, within GFF2263at 319.095 kb on - strand, within GFF2263at 319.398 kb on - strandat 319.398 kb on - strandat 319.398 kb on - strandat 319.464 kb on + strandat 319.464 kb on + strandat 319.465 kb on - strandat 319.465 kb on - strandat 319.621 kb on - strand, within GFF2264at 319.621 kb on - strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.629 kb on + strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.630 kb on - strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.779 kb on + strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264at 319.780 kb on - strand, within GFF2264

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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317,339 - GFF2261 0.62 -0.7
317,339 - GFF2261 0.62 +0.7
317,638 + GFF2261 0.81 -0.4
317,638 + GFF2261 0.81 +2.3
317,638 + GFF2261 0.81 +0.2
317,638 + GFF2261 0.81 -1.3
317,639 - GFF2261 0.81 -1.2
317,639 - GFF2261 0.81 +0.6
317,639 - GFF2261 0.81 +0.6
317,639 - GFF2261 0.81 +1.3
317,639 - GFF2261 0.81 +0.1
317,639 - GFF2261 0.81 -0.3
317,639 - GFF2261 0.81 -0.0
317,657 - GFF2261 0.82 -0.8
317,657 - GFF2261 0.82 +0.2
317,666 - GFF2261 0.82 -0.4
317,818 + +0.7
317,896 + +0.0
317,896 + -0.2
317,896 + -0.4
317,896 + +0.3
317,896 + -0.5
317,896 + +0.0
317,897 - +1.1
317,897 - +0.5
317,935 + +0.9
317,935 + -1.7
317,935 + +0.7
317,935 + -0.2
317,935 + -0.2
317,935 + +0.3
317,936 - -0.4
317,936 - +1.2
317,936 - +0.9
317,936 - -1.0
318,054 + -0.1
318,054 + +0.8
318,054 + +0.3
318,055 - +0.5
318,113 + +0.2
318,113 + -0.1
318,114 - +0.9
318,298 + GFF2262 0.28 -0.8
318,299 - GFF2262 0.28 -2.0
318,917 + GFF2263 0.17 +0.9
318,917 + GFF2263 0.17 -1.0
318,917 + GFF2263 0.17 -0.3
318,918 - GFF2263 0.17 -1.1
318,918 - GFF2263 0.17 -1.2
318,918 - GFF2263 0.17 -0.2
319,085 + GFF2263 0.52 -1.1
319,085 + GFF2263 0.52 -0.2
319,085 + GFF2263 0.52 +0.1
319,085 + GFF2263 0.52 +1.2
319,085 + GFF2263 0.52 -0.4
319,085 + GFF2263 0.52 -0.4
319,085 + GFF2263 0.52 -1.9
319,085 + GFF2263 0.52 +0.2
319,085 + GFF2263 0.52 +1.1
319,085 + GFF2263 0.52 -0.4
319,086 - GFF2263 0.52 -0.3
319,086 - GFF2263 0.52 -0.2
319,086 - GFF2263 0.52 +0.1
319,086 - GFF2263 0.52 -0.1
319,086 - GFF2263 0.52 -0.7
319,086 - GFF2263 0.52 -1.4
319,086 - GFF2263 0.52 -0.6
319,086 - GFF2263 0.52 +0.1
319,086 - GFF2263 0.52 -0.1
319,086 - GFF2263 0.52 -0.7
319,094 + GFF2263 0.54 -0.8
319,095 - GFF2263 0.54 +0.6
319,398 - -0.9
319,398 - +3.5
319,398 - -1.1
319,464 + -0.5
319,464 + -0.7
319,465 - -0.1
319,465 - -2.4
319,621 - GFF2264 0.21 +0.2
319,621 - GFF2264 0.21 -0.9
319,629 + GFF2264 0.22 -0.5
319,629 + GFF2264 0.22 -0.4
319,629 + GFF2264 0.22 -0.9
319,629 + GFF2264 0.22 -0.1
319,629 + GFF2264 0.22 -0.2
319,629 + GFF2264 0.22 -0.1
319,630 - GFF2264 0.22 +0.2
319,630 - GFF2264 0.22 -0.4
319,630 - GFF2264 0.22 +1.9
319,630 - GFF2264 0.22 -0.4
319,630 - GFF2264 0.22 +0.1
319,630 - GFF2264 0.22 -0.8
319,630 - GFF2264 0.22 -0.1
319,630 - GFF2264 0.22 -1.5
319,630 - GFF2264 0.22 +1.4
319,630 - GFF2264 0.22 +0.6
319,779 + GFF2264 0.38 -0.3
319,779 + GFF2264 0.38 +0.3
319,779 + GFF2264 0.38 +1.9
319,779 + GFF2264 0.38 -1.8
319,780 - GFF2264 0.38 -0.2
319,780 - GFF2264 0.38 -1.3
319,780 - GFF2264 0.38 -0.7
319,780 - GFF2264 0.38 -1.4
319,780 - GFF2264 0.38 -0.1
319,780 - GFF2264 0.38 -1.4
319,780 - GFF2264 0.38 -1.4

Or see this region's nucleotide sequence