Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2230 and GFF2231 overlap by 4 nucleotides GFF2231 and GFF2232 are separated by 34 nucleotides GFF2232 and GFF2233 are separated by 121 nucleotides
GFF2230 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6), at 292,084 to 292,785
GFF2230
GFF2231 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6), at 292,782 to 293,429
GFF2231
GFF2232 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ 3-oxoadipyl-CoA thiolase (EC 2.3.1.174), at 293,464 to 294,669
GFF2232
GFF2233 - hypothetical protein, at 294,791 to 295,810
GFF2233
Position (kb) 293
294
295 Strain fitness (log2 ratio) -2
-1
0
1 at 292.592 kb on - strand, within GFF2230 at 292.653 kb on + strand, within GFF2230 at 292.794 kb on + strand at 292.794 kb on + strand at 292.794 kb on + strand at 292.795 kb on - strand at 292.987 kb on - strand, within GFF2231 at 292.987 kb on - strand, within GFF2231 at 292.987 kb on - strand, within GFF2231 at 292.987 kb on - strand, within GFF2231 at 293.445 kb on + strand at 293.445 kb on + strand at 293.445 kb on + strand at 293.446 kb on - strand at 293.515 kb on + strand at 293.888 kb on - strand, within GFF2232 at 293.939 kb on - strand, within GFF2232 at 293.986 kb on + strand, within GFF2232 at 294.604 kb on + strand at 294.605 kb on - strand at 294.737 kb on - strand at 295.160 kb on + strand, within GFF2233 at 295.209 kb on - strand, within GFF2233 at 295.241 kb on + strand, within GFF2233 at 295.241 kb on + strand, within GFF2233 at 295.242 kb on - strand, within GFF2233 at 295.242 kb on - strand, within GFF2233 at 295.242 kb on - strand, within GFF2233 at 295.298 kb on + strand, within GFF2233 at 295.385 kb on + strand, within GFF2233 at 295.406 kb on + strand, within GFF2233 at 295.406 kb on + strand, within GFF2233
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 292,592 - GFF2230 0.72 +0.8 292,653 + GFF2230 0.81 -1.8 292,794 + -0.0 292,794 + +0.7 292,794 + +0.9 292,795 - -0.2 292,987 - GFF2231 0.32 +0.9 292,987 - GFF2231 0.32 -0.4 292,987 - GFF2231 0.32 -0.8 292,987 - GFF2231 0.32 +0.9 293,445 + -0.8 293,445 + -0.1 293,445 + -0.1 293,446 - -0.7 293,515 + +0.6 293,888 - GFF2232 0.35 +0.4 293,939 - GFF2232 0.39 +0.0 293,986 + GFF2232 0.43 +0.4 294,604 + -0.5 294,605 - +0.1 294,737 - +0.4 295,160 + GFF2233 0.36 -0.8 295,209 - GFF2233 0.41 -0.4 295,241 + GFF2233 0.44 +1.2 295,241 + GFF2233 0.44 -0.9 295,242 - GFF2233 0.44 +0.2 295,242 - GFF2233 0.44 -1.1 295,242 - GFF2233 0.44 +0.3 295,298 + GFF2233 0.50 +0.5 295,385 + GFF2233 0.58 -0.8 295,406 + GFF2233 0.60 +0.7 295,406 + GFF2233 0.60 -0.4
Or see this region's nucleotide sequence