Strain Fitness in Variovorax sp. SCN45 around GFF2217

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2216 and GFF2217 are separated by 139 nucleotidesGFF2217 and GFF2218 are separated by 122 nucleotidesGFF2218 and GFF2219 are separated by 139 nucleotides GFF2216 - Uncharacterized protein Tbd_1903, at 277,524 to 278,645 GFF2216 GFF2217 - Transcriptional regulator, LysR family, at 278,785 to 279,747 GFF2217 GFF2218 - FIG00455441: hypothetical protein, at 279,870 to 280,391 GFF2218 GFF2219 - FIG00454641: hypothetical protein, at 280,531 to 281,538 GFF2219 Position (kb) 278 279 280Strain fitness (log2 ratio) -2 -1 0 1at 278.182 kb on + strand, within GFF2216at 278.182 kb on + strand, within GFF2216at 278.182 kb on + strand, within GFF2216at 278.182 kb on + strand, within GFF2216at 278.182 kb on + strand, within GFF2216at 278.206 kb on + strand, within GFF2216at 278.206 kb on + strand, within GFF2216at 278.206 kb on + strand, within GFF2216at 278.206 kb on + strand, within GFF2216at 278.206 kb on + strand, within GFF2216at 278.206 kb on + strand, within GFF2216at 278.206 kb on + strand, within GFF2216at 278.206 kb on + strand, within GFF2216at 278.206 kb on + strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.207 kb on - strand, within GFF2216at 278.239 kb on + strand, within GFF2216at 278.239 kb on + strand, within GFF2216at 278.240 kb on - strand, within GFF2216at 278.240 kb on - strand, within GFF2216at 278.240 kb on - strand, within GFF2216at 278.240 kb on - strand, within GFF2216at 278.308 kb on + strand, within GFF2216at 278.308 kb on + strand, within GFF2216at 278.308 kb on + strand, within GFF2216at 278.308 kb on + strand, within GFF2216at 278.309 kb on - strand, within GFF2216at 278.309 kb on - strand, within GFF2216at 278.309 kb on - strand, within GFF2216at 278.309 kb on - strand, within GFF2216at 278.309 kb on - strand, within GFF2216at 278.554 kb on - strandat 278.663 kb on - strandat 278.663 kb on - strandat 278.690 kb on + strandat 278.690 kb on + strandat 278.690 kb on + strandat 278.690 kb on + strandat 278.690 kb on + strandat 278.690 kb on + strandat 278.690 kb on + strandat 278.690 kb on + strandat 278.690 kb on + strandat 278.691 kb on - strandat 278.691 kb on - strandat 278.691 kb on - strandat 278.691 kb on - strandat 278.691 kb on - strandat 278.691 kb on - strandat 278.691 kb on - strandat 278.691 kb on - strandat 278.691 kb on - strandat 278.691 kb on - strandat 278.691 kb on - strandat 278.703 kb on + strandat 278.703 kb on + strandat 278.703 kb on + strandat 278.703 kb on + strandat 278.704 kb on - strandat 278.704 kb on - strandat 278.704 kb on - strandat 278.704 kb on - strandat 278.704 kb on - strandat 278.743 kb on + strandat 278.744 kb on - strandat 278.773 kb on + strandat 278.774 kb on - strandat 278.774 kb on - strandat 278.774 kb on - strandat 278.774 kb on - strandat 278.774 kb on - strandat 278.774 kb on - strandat 278.774 kb on - strandat 279.136 kb on + strand, within GFF2217at 279.136 kb on + strand, within GFF2217at 279.136 kb on + strand, within GFF2217at 279.136 kb on + strand, within GFF2217at 279.137 kb on - strand, within GFF2217at 279.137 kb on - strand, within GFF2217at 279.137 kb on - strand, within GFF2217at 279.137 kb on - strand, within GFF2217at 279.296 kb on - strand, within GFF2217at 279.296 kb on - strand, within GFF2217at 279.296 kb on - strand, within GFF2217at 279.358 kb on + strand, within GFF2217at 279.359 kb on - strand, within GFF2217at 279.421 kb on + strand, within GFF2217at 279.421 kb on + strand, within GFF2217at 279.421 kb on + strand, within GFF2217at 279.421 kb on + strand, within GFF2217at 279.422 kb on - strand, within GFF2217at 279.422 kb on - strand, within GFF2217at 279.422 kb on - strand, within GFF2217at 279.595 kb on + strand, within GFF2217at 279.596 kb on - strand, within GFF2217at 279.795 kb on + strandat 279.841 kb on + strandat 279.842 kb on - strandat 279.842 kb on - strandat 279.842 kb on - strandat 279.842 kb on - strandat 279.842 kb on - strandat 279.894 kb on + strandat 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.048 kb on - strand, within GFF2218at 280.048 kb on - strand, within GFF2218at 280.048 kb on - strand, within GFF2218at 280.048 kb on - strand, within GFF2218at 280.089 kb on + strand, within GFF2218at 280.089 kb on + strand, within GFF2218at 280.090 kb on - strand, within GFF2218at 280.090 kb on - strand, within GFF2218at 280.090 kb on - strand, within GFF2218at 280.358 kb on - strandat 280.505 kb on + strandat 280.505 kb on + strandat 280.505 kb on + strandat 280.505 kb on + strandat 280.505 kb on + strandat 280.505 kb on + strandat 280.506 kb on - strandat 280.506 kb on - strandat 280.592 kb on - strandat 280.636 kb on + strand, within GFF2219at 280.637 kb on - strand, within GFF2219at 280.705 kb on + strand, within GFF2219at 280.705 kb on + strand, within GFF2219at 280.705 kb on + strand, within GFF2219at 280.706 kb on - strand, within GFF2219

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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278,182 + GFF2216 0.59 +0.3
278,182 + GFF2216 0.59 +0.1
278,182 + GFF2216 0.59 -0.5
278,182 + GFF2216 0.59 +0.2
278,182 + GFF2216 0.59 -1.1
278,206 + GFF2216 0.61 +1.2
278,206 + GFF2216 0.61 +0.3
278,206 + GFF2216 0.61 +0.3
278,206 + GFF2216 0.61 -0.8
278,206 + GFF2216 0.61 -0.3
278,206 + GFF2216 0.61 +0.0
278,206 + GFF2216 0.61 -0.6
278,206 + GFF2216 0.61 +0.5
278,206 + GFF2216 0.61 -0.1
278,207 - GFF2216 0.61 +1.2
278,207 - GFF2216 0.61 +1.2
278,207 - GFF2216 0.61 +0.1
278,207 - GFF2216 0.61 -0.5
278,207 - GFF2216 0.61 +0.2
278,207 - GFF2216 0.61 -0.7
278,207 - GFF2216 0.61 +1.4
278,207 - GFF2216 0.61 +0.6
278,207 - GFF2216 0.61 -0.2
278,207 - GFF2216 0.61 -0.2
278,207 - GFF2216 0.61 +0.9
278,207 - GFF2216 0.61 +0.8
278,207 - GFF2216 0.61 -0.2
278,207 - GFF2216 0.61 -0.7
278,207 - GFF2216 0.61 +0.7
278,207 - GFF2216 0.61 -0.1
278,207 - GFF2216 0.61 -0.1
278,239 + GFF2216 0.64 +1.1
278,239 + GFF2216 0.64 -0.8
278,240 - GFF2216 0.64 +0.8
278,240 - GFF2216 0.64 +0.0
278,240 - GFF2216 0.64 -0.9
278,240 - GFF2216 0.64 -0.3
278,308 + GFF2216 0.70 -0.3
278,308 + GFF2216 0.70 +1.5
278,308 + GFF2216 0.70 +1.3
278,308 + GFF2216 0.70 -0.4
278,309 - GFF2216 0.70 -0.3
278,309 - GFF2216 0.70 +0.0
278,309 - GFF2216 0.70 -1.7
278,309 - GFF2216 0.70 -0.9
278,309 - GFF2216 0.70 -0.9
278,554 - +0.9
278,663 - +0.3
278,663 - +0.1
278,690 + +0.1
278,690 + +0.2
278,690 + +0.4
278,690 + -0.2
278,690 + -0.9
278,690 + -0.2
278,690 + -0.1
278,690 + +0.8
278,690 + -1.3
278,691 - -0.8
278,691 - -0.5
278,691 - +0.2
278,691 - -0.5
278,691 - +0.9
278,691 - +1.1
278,691 - +0.0
278,691 - +0.9
278,691 - +1.5
278,691 - -0.2
278,691 - -0.3
278,703 + -0.5
278,703 + -0.3
278,703 + -1.1
278,703 + -2.0
278,704 - +0.2
278,704 - +0.2
278,704 - -0.8
278,704 - +0.9
278,704 - -1.2
278,743 + +0.3
278,744 - -0.4
278,773 + -0.0
278,774 - -0.9
278,774 - -0.1
278,774 - -0.3
278,774 - -0.7
278,774 - -1.0
278,774 - -0.4
278,774 - -1.2
279,136 + GFF2217 0.36 +0.4
279,136 + GFF2217 0.36 -0.6
279,136 + GFF2217 0.36 -0.3
279,136 + GFF2217 0.36 -0.3
279,137 - GFF2217 0.37 -0.8
279,137 - GFF2217 0.37 +0.1
279,137 - GFF2217 0.37 -0.9
279,137 - GFF2217 0.37 -1.1
279,296 - GFF2217 0.53 +0.5
279,296 - GFF2217 0.53 +0.9
279,296 - GFF2217 0.53 +1.5
279,358 + GFF2217 0.60 +0.0
279,359 - GFF2217 0.60 +0.7
279,421 + GFF2217 0.66 +0.0
279,421 + GFF2217 0.66 -0.1
279,421 + GFF2217 0.66 +1.0
279,421 + GFF2217 0.66 -0.1
279,422 - GFF2217 0.66 +0.1
279,422 - GFF2217 0.66 -0.9
279,422 - GFF2217 0.66 -0.4
279,595 + GFF2217 0.84 -0.5
279,596 - GFF2217 0.84 -0.5
279,795 + -1.9
279,841 + -1.0
279,842 - -0.5
279,842 - +1.0
279,842 - -0.7
279,842 - -0.2
279,842 - -0.1
279,894 + +0.7
280,047 + GFF2218 0.34 -1.7
280,047 + GFF2218 0.34 -0.4
280,047 + GFF2218 0.34 +0.5
280,047 + GFF2218 0.34 +1.0
280,047 + GFF2218 0.34 -0.5
280,047 + GFF2218 0.34 +1.3
280,047 + GFF2218 0.34 -0.3
280,047 + GFF2218 0.34 -1.1
280,048 - GFF2218 0.34 +0.1
280,048 - GFF2218 0.34 -0.4
280,048 - GFF2218 0.34 -0.4
280,048 - GFF2218 0.34 -0.4
280,089 + GFF2218 0.42 +1.5
280,089 + GFF2218 0.42 -0.0
280,090 - GFF2218 0.42 -0.4
280,090 - GFF2218 0.42 +0.2
280,090 - GFF2218 0.42 +0.1
280,358 - -0.2
280,505 + -0.1
280,505 + -0.7
280,505 + -0.1
280,505 + +0.4
280,505 + -0.9
280,505 + -0.7
280,506 - -0.2
280,506 - +0.1
280,592 - +0.3
280,636 + GFF2219 0.10 +0.0
280,637 - GFF2219 0.11 +0.7
280,705 + GFF2219 0.17 +0.4
280,705 + GFF2219 0.17 +0.8
280,705 + GFF2219 0.17 -0.1
280,706 - GFF2219 0.17 -0.5

Or see this region's nucleotide sequence