Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2206 and GFF2207 overlap by 4 nucleotides GFF2207 and GFF2208 overlap by 8 nucleotides GFF2208 and GFF2209 are separated by 4 nucleotides
GFF2206 - Type II/IV secretion system protein TadC, associated with Flp pilus assembly, at 267,577 to 268,539
GFF2206
GFF2207 - Flp pilus assembly protein TadB, at 268,536 to 269,534
GFF2207
GFF2208 - Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily, at 269,527 to 270,840
GFF2208
GFF2209 - hypothetical protein, at 270,845 to 272,128
GFF2209
Position (kb) 269
270
271 Strain fitness (log2 ratio) -2
-1
0
1 at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.561 kb on - strand at 268.600 kb on + strand at 268.600 kb on + strand at 268.601 kb on - strand at 268.601 kb on - strand at 268.601 kb on - strand at 268.604 kb on + strand at 268.604 kb on + strand at 268.605 kb on - strand at 268.659 kb on - strand, within GFF2207 at 269.037 kb on + strand, within GFF2207 at 269.041 kb on + strand, within GFF2207 at 269.042 kb on - strand, within GFF2207 at 269.172 kb on + strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.300 kb on + strand, within GFF2207 at 270.100 kb on + strand, within GFF2208 at 270.100 kb on + strand, within GFF2208 at 270.101 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.824 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 271.524 kb on + strand, within GFF2209
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 268,560 + +0.5 268,560 + -1.1 268,560 + +0.9 268,560 + +0.0 268,560 + -0.4 268,561 - +0.5 268,600 + +1.1 268,600 + -0.5 268,601 - +0.6 268,601 - -0.2 268,601 - +1.6 268,604 + -0.9 268,604 + -0.2 268,605 - +0.5 268,659 - GFF2207 0.12 +0.0 269,037 + GFF2207 0.50 -0.6 269,041 + GFF2207 0.51 +0.2 269,042 - GFF2207 0.51 -0.5 269,172 + GFF2207 0.64 +0.9 269,173 - GFF2207 0.64 +1.2 269,173 - GFF2207 0.64 +1.4 269,173 - GFF2207 0.64 -0.1 269,300 + GFF2207 0.76 -0.6 270,100 + GFF2208 0.44 -0.6 270,100 + GFF2208 0.44 +0.3 270,101 - GFF2208 0.44 +1.3 270,132 - GFF2208 0.46 -1.9 270,132 - GFF2208 0.46 +0.7 270,132 - GFF2208 0.46 +0.9 270,132 - GFF2208 0.46 +0.1 270,506 + GFF2208 0.75 +1.0 270,506 + GFF2208 0.75 +0.9 270,506 + GFF2208 0.75 +0.9 270,506 + GFF2208 0.75 +1.2 270,506 + GFF2208 0.75 +1.1 270,506 + GFF2208 0.75 -0.1 270,506 + GFF2208 0.75 -0.0 270,506 + GFF2208 0.75 +1.2 270,506 + GFF2208 0.75 +0.1 270,507 - GFF2208 0.75 -0.6 270,507 - GFF2208 0.75 +0.5 270,507 - GFF2208 0.75 -1.6 270,507 - GFF2208 0.75 -0.4 270,507 - GFF2208 0.75 -1.1 270,507 - GFF2208 0.75 -1.6 270,507 - GFF2208 0.75 -0.3 270,507 - GFF2208 0.75 -0.9 270,507 - GFF2208 0.75 -0.3 270,507 - GFF2208 0.75 +0.9 270,507 - GFF2208 0.75 +0.4 270,824 + +0.1 270,942 + -0.2 270,942 + +1.1 270,942 + +0.4 270,942 + -0.3 270,942 + +0.0 270,942 + +0.2 270,942 + -0.9 270,942 + -0.7 270,943 - -0.9 270,943 - -0.2 270,943 - -0.2 270,943 - +1.5 270,943 - -0.2 270,943 - -0.2 270,943 - -1.1 270,943 - -0.4 270,943 - -1.0 270,943 - +0.4 271,524 + GFF2209 0.53 +0.6
Or see this region's nucleotide sequence