Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2171 and GFF2172 are separated by 73 nucleotides GFF2172 and GFF2173 are separated by 12 nucleotides GFF2173 and GFF2174 overlap by 4 nucleotides GFF2174 and GFF2175 are separated by 19 nucleotides
GFF2171 - MBL-fold metallohydrolase SPO0683, at 225,388 to 226,356
GFF2171
GFF2172 - Permease of the drug/metabolite transporter (DMT) superfamily, at 226,430 to 227,302
GFF2172
GFF2173 - no description, at 227,315 to 228,502
GFF2173
GFF2174 - hypothetical protein, at 228,499 to 229,212
GFF2174
GFF2175 - hypothetical protein, at 229,232 to 230,764
GFF2175
Position (kb) 227
228
229 Strain fitness (log2 ratio) -1
0
1
2
3 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.965 kb on - strand, within GFF2172 at 226.965 kb on - strand, within GFF2172 at 226.965 kb on - strand, within GFF2172 at 226.965 kb on - strand, within GFF2172 at 226.965 kb on - strand, within GFF2172 at 226.996 kb on + strand, within GFF2172 at 226.996 kb on + strand, within GFF2172 at 226.996 kb on + strand, within GFF2172 at 226.997 kb on - strand, within GFF2172 at 226.997 kb on - strand, within GFF2172 at 226.997 kb on - strand, within GFF2172 at 227.160 kb on - strand, within GFF2172 at 227.288 kb on - strand at 227.883 kb on - strand, within GFF2173 at 228.338 kb on + strand, within GFF2173 at 228.339 kb on - strand, within GFF2173 at 228.339 kb on - strand, within GFF2173 at 228.827 kb on + strand, within GFF2174 at 229.281 kb on + strand at 229.282 kb on - strand at 229.500 kb on + strand, within GFF2175 at 229.500 kb on + strand, within GFF2175 at 229.501 kb on - strand, within GFF2175 at 229.501 kb on - strand, within GFF2175
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 226,964 + GFF2172 0.61 -0.2 226,964 + GFF2172 0.61 -0.4 226,964 + GFF2172 0.61 -0.5 226,964 + GFF2172 0.61 -1.1 226,964 + GFF2172 0.61 -0.1 226,964 + GFF2172 0.61 +0.2 226,964 + GFF2172 0.61 -1.3 226,964 + GFF2172 0.61 +0.1 226,965 - GFF2172 0.61 -0.4 226,965 - GFF2172 0.61 -0.2 226,965 - GFF2172 0.61 +0.0 226,965 - GFF2172 0.61 -0.3 226,965 - GFF2172 0.61 +0.4 226,996 + GFF2172 0.65 -0.8 226,996 + GFF2172 0.65 +0.1 226,996 + GFF2172 0.65 -0.4 226,997 - GFF2172 0.65 +0.5 226,997 - GFF2172 0.65 -0.6 226,997 - GFF2172 0.65 -0.7 227,160 - GFF2172 0.84 -1.1 227,288 - +0.5 227,883 - GFF2173 0.48 -1.4 228,338 + GFF2173 0.86 +3.5 228,339 - GFF2173 0.86 -0.4 228,339 - GFF2173 0.86 -1.2 228,827 + GFF2174 0.46 -0.3 229,281 + +0.0 229,282 - -0.6 229,500 + GFF2175 0.17 -0.8 229,500 + GFF2175 0.17 -1.6 229,501 - GFF2175 0.18 +1.9 229,501 - GFF2175 0.18 -0.3
Or see this region's nucleotide sequence