Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2106 and GFF2107 are separated by 32 nucleotides GFF2107 and GFF2108 overlap by 4 nucleotides GFF2108 and GFF2109 are separated by 19 nucleotides GFF2109 and GFF2110 are separated by 56 nucleotides
GFF2106 - hypothetical protein, at 156,566 to 157,726
GFF2106
GFF2107 - no description, at 157,759 to 158,112
GFF2107
GFF2108 - hypothetical protein, at 158,109 to 159,125
GFF2108
GFF2109 - FIG00454067: hypothetical protein, at 159,145 to 159,390
GFF2109
GFF2110 - no description, at 159,447 to 160,289
GFF2110
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.148 kb on + strand, within GFF2106 at 157.148 kb on + strand, within GFF2106 at 157.148 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.235 kb on + strand, within GFF2106 at 157.235 kb on + strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.679 kb on + strand at 157.680 kb on - strand at 157.680 kb on - strand at 157.808 kb on + strand, within GFF2107 at 157.808 kb on + strand, within GFF2107 at 157.808 kb on + strand, within GFF2107 at 157.809 kb on - strand, within GFF2107 at 157.847 kb on - strand, within GFF2107 at 158.097 kb on - strand at 158.509 kb on + strand, within GFF2108 at 158.526 kb on - strand, within GFF2108 at 158.720 kb on - strand, within GFF2108 at 158.720 kb on - strand, within GFF2108 at 159.146 kb on + strand at 159.146 kb on + strand at 159.147 kb on - strand at 159.296 kb on + strand, within GFF2109 at 159.296 kb on + strand, within GFF2109 at 159.374 kb on + strand at 159.375 kb on - strand at 159.376 kb on - strand at 159.460 kb on + strand at 159.460 kb on + strand at 159.461 kb on - strand at 159.498 kb on + strand at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.536 kb on + strand, within GFF2110 at 159.536 kb on - strand, within GFF2110 at 159.542 kb on - strand, within GFF2110 at 159.607 kb on + strand, within GFF2110 at 159.629 kb on - strand, within GFF2110 at 159.779 kb on - strand, within GFF2110 at 159.779 kb on - strand, within GFF2110 at 159.965 kb on - strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.058 kb on - strand, within GFF2110 at 160.058 kb on - strand, within GFF2110 at 160.058 kb on - strand, within GFF2110
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 157,148 + GFF2106 0.50 -1.2 157,148 + GFF2106 0.50 +0.2 157,148 + GFF2106 0.50 +0.1 157,160 + GFF2106 0.51 -0.2 157,160 + GFF2106 0.51 -0.2 157,160 + GFF2106 0.51 -1.0 157,160 + GFF2106 0.51 +0.3 157,160 + GFF2106 0.51 -0.8 157,160 + GFF2106 0.51 -0.0 157,160 + GFF2106 0.51 -0.4 157,160 + GFF2106 0.51 -0.4 157,160 + GFF2106 0.51 +0.9 157,160 + GFF2106 0.51 +1.9 157,161 - GFF2106 0.51 +1.1 157,161 - GFF2106 0.51 -0.5 157,161 - GFF2106 0.51 -0.4 157,161 - GFF2106 0.51 +0.4 157,235 + GFF2106 0.58 -1.0 157,235 + GFF2106 0.58 -0.0 157,236 - GFF2106 0.58 -0.1 157,236 - GFF2106 0.58 +0.6 157,236 - GFF2106 0.58 +1.5 157,236 - GFF2106 0.58 +0.3 157,679 + -1.1 157,680 - -0.2 157,680 - -0.1 157,808 + GFF2107 0.14 +0.4 157,808 + GFF2107 0.14 +2.5 157,808 + GFF2107 0.14 -0.0 157,809 - GFF2107 0.14 -1.1 157,847 - GFF2107 0.25 +1.3 158,097 - -1.0 158,509 + GFF2108 0.39 +0.7 158,526 - GFF2108 0.41 +0.3 158,720 - GFF2108 0.60 +0.3 158,720 - GFF2108 0.60 -0.1 159,146 + +0.3 159,146 + -1.5 159,147 - +0.2 159,296 + GFF2109 0.61 -1.4 159,296 + GFF2109 0.61 -0.9 159,374 + +0.0 159,375 - -0.1 159,376 - +0.2 159,460 + +0.4 159,460 + -0.1 159,461 - +0.7 159,498 + -0.7 159,535 + GFF2110 0.10 +0.3 159,535 + GFF2110 0.10 -0.5 159,535 + GFF2110 0.10 -0.1 159,535 + GFF2110 0.10 -0.3 159,535 + GFF2110 0.10 -1.9 159,536 + GFF2110 0.11 -0.2 159,536 - GFF2110 0.11 +0.1 159,542 - GFF2110 0.11 -0.9 159,607 + GFF2110 0.19 -0.5 159,629 - GFF2110 0.22 -0.3 159,779 - GFF2110 0.39 +1.4 159,779 - GFF2110 0.39 -0.5 159,965 - GFF2110 0.61 -0.4 160,057 + GFF2110 0.72 +0.7 160,057 + GFF2110 0.72 -1.1 160,057 + GFF2110 0.72 -1.5 160,058 - GFF2110 0.72 +0.5 160,058 - GFF2110 0.72 -1.1 160,058 - GFF2110 0.72 +2.3
Or see this region's nucleotide sequence