Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2099 and GFF2100 are separated by 13 nucleotides GFF2100 and GFF2101 are separated by 100 nucleotides GFF2101 and GFF2102 are separated by 158 nucleotides
GFF2099 - Acyl-CoA dehydrogenase, at 148,059 to 149,207
GFF2099
GFF2100 - no description, at 149,221 to 149,598
GFF2100
GFF2101 - no description, at 149,699 to 150,430
GFF2101
GFF2102 - no description, at 150,589 to 151,461
GFF2102
Position (kb) 149
150 Strain fitness (log2 ratio) -2
-1
0
1 at 148.249 kb on - strand, within GFF2099 at 148.290 kb on + strand, within GFF2099 at 148.356 kb on + strand, within GFF2099 at 148.356 kb on + strand, within GFF2099 at 148.356 kb on + strand, within GFF2099 at 148.357 kb on - strand, within GFF2099 at 148.395 kb on + strand, within GFF2099 at 148.396 kb on - strand, within GFF2099 at 148.509 kb on + strand, within GFF2099 at 148.509 kb on + strand, within GFF2099 at 148.863 kb on + strand, within GFF2099 at 148.867 kb on + strand, within GFF2099 at 148.867 kb on + strand, within GFF2099 at 148.868 kb on - strand, within GFF2099 at 149.094 kb on + strand at 149.112 kb on + strand at 149.112 kb on + strand at 149.112 kb on + strand at 149.112 kb on + strand at 149.113 kb on - strand at 149.113 kb on - strand at 149.113 kb on - strand at 149.130 kb on + strand at 149.131 kb on - strand at 149.131 kb on - strand at 149.157 kb on + strand at 149.158 kb on - strand at 149.438 kb on + strand, within GFF2100 at 149.439 kb on - strand, within GFF2100 at 149.439 kb on - strand, within GFF2100 at 149.531 kb on + strand, within GFF2100 at 149.826 kb on + strand, within GFF2101 at 149.826 kb on + strand, within GFF2101 at 149.826 kb on + strand, within GFF2101 at 149.826 kb on + strand, within GFF2101 at 149.826 kb on + strand, within GFF2101 at 149.826 kb on + strand, within GFF2101 at 149.826 kb on + strand, within GFF2101 at 149.827 kb on - strand, within GFF2101 at 149.827 kb on - strand, within GFF2101 at 149.827 kb on - strand, within GFF2101 at 149.827 kb on - strand, within GFF2101 at 149.827 kb on - strand, within GFF2101 at 149.827 kb on - strand, within GFF2101 at 149.827 kb on - strand, within GFF2101 at 149.827 kb on - strand, within GFF2101 at 150.123 kb on + strand, within GFF2101 at 150.123 kb on + strand, within GFF2101 at 150.124 kb on - strand, within GFF2101 at 150.309 kb on + strand, within GFF2101 at 150.310 kb on - strand, within GFF2101 at 150.333 kb on + strand, within GFF2101 at 150.334 kb on - strand, within GFF2101 at 150.334 kb on - strand, within GFF2101 at 150.337 kb on - strand, within GFF2101 at 150.396 kb on + strand at 150.396 kb on + strand at 150.396 kb on + strand at 150.397 kb on - strand at 150.397 kb on - strand at 150.397 kb on - strand at 150.397 kb on - strand at 150.418 kb on + strand at 150.548 kb on + strand at 150.549 kb on - strand at 150.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 148,249 - GFF2099 0.17 -0.5 148,290 + GFF2099 0.20 -0.4 148,356 + GFF2099 0.26 +0.0 148,356 + GFF2099 0.26 -0.8 148,356 + GFF2099 0.26 +0.3 148,357 - GFF2099 0.26 +0.5 148,395 + GFF2099 0.29 -1.0 148,396 - GFF2099 0.29 -1.0 148,509 + GFF2099 0.39 +0.6 148,509 + GFF2099 0.39 -0.4 148,863 + GFF2099 0.70 -1.0 148,867 + GFF2099 0.70 +0.3 148,867 + GFF2099 0.70 -0.5 148,868 - GFF2099 0.70 +1.3 149,094 + +1.2 149,112 + -0.1 149,112 + +0.0 149,112 + +1.2 149,112 + -0.1 149,113 - -0.9 149,113 - -0.4 149,113 - +0.4 149,130 + -0.5 149,131 - -0.5 149,131 - -0.2 149,157 + -0.7 149,158 - -0.6 149,438 + GFF2100 0.57 -1.5 149,439 - GFF2100 0.58 -1.0 149,439 - GFF2100 0.58 -0.7 149,531 + GFF2100 0.82 +0.2 149,826 + GFF2101 0.17 -0.6 149,826 + GFF2101 0.17 -0.2 149,826 + GFF2101 0.17 -0.2 149,826 + GFF2101 0.17 -1.2 149,826 + GFF2101 0.17 -0.3 149,826 + GFF2101 0.17 -0.1 149,826 + GFF2101 0.17 +0.3 149,827 - GFF2101 0.17 +0.1 149,827 - GFF2101 0.17 -0.6 149,827 - GFF2101 0.17 -0.1 149,827 - GFF2101 0.17 -0.4 149,827 - GFF2101 0.17 +0.3 149,827 - GFF2101 0.17 +1.2 149,827 - GFF2101 0.17 +0.3 149,827 - GFF2101 0.17 +0.1 150,123 + GFF2101 0.58 +0.1 150,123 + GFF2101 0.58 -0.3 150,124 - GFF2101 0.58 -0.1 150,309 + GFF2101 0.83 -0.2 150,310 - GFF2101 0.83 -0.0 150,333 + GFF2101 0.87 +0.3 150,334 - GFF2101 0.87 +0.1 150,334 - GFF2101 0.87 -0.1 150,337 - GFF2101 0.87 -1.9 150,396 + +1.2 150,396 + -0.3 150,396 + +0.2 150,397 - -0.8 150,397 - -0.2 150,397 - +1.7 150,397 - +0.1 150,418 + +0.8 150,548 + -1.8 150,549 - -0.1 150,549 - +0.2
Or see this region's nucleotide sequence