Strain Fitness in Variovorax sp. SCN45 around GFF2098

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2097 and GFF2098 are separated by 44 nucleotidesGFF2098 and GFF2099 are separated by 27 nucleotides GFF2097 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 145,315 to 146,427 GFF2097 GFF2098 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 146,472 to 148,031 GFF2098 GFF2099 - Acyl-CoA dehydrogenase, at 148,059 to 149,207 GFF2099 Position (kb) 146 147 148 149Strain fitness (log2 ratio) -1 0 1at 145.699 kb on + strand, within GFF2097at 145.699 kb on + strand, within GFF2097at 145.699 kb on + strand, within GFF2097at 145.700 kb on - strand, within GFF2097at 145.700 kb on - strand, within GFF2097at 145.700 kb on - strand, within GFF2097at 145.769 kb on - strand, within GFF2097at 145.769 kb on - strand, within GFF2097at 145.769 kb on - strand, within GFF2097at 145.769 kb on - strand, within GFF2097at 145.909 kb on + strand, within GFF2097at 145.909 kb on + strand, within GFF2097at 145.909 kb on + strand, within GFF2097at 145.909 kb on + strand, within GFF2097at 145.909 kb on + strand, within GFF2097at 145.909 kb on + strand, within GFF2097at 145.910 kb on - strand, within GFF2097at 145.910 kb on - strand, within GFF2097at 145.910 kb on - strand, within GFF2097at 145.910 kb on - strand, within GFF2097at 145.981 kb on + strand, within GFF2097at 145.981 kb on + strand, within GFF2097at 145.990 kb on + strand, within GFF2097at 145.990 kb on + strand, within GFF2097at 145.990 kb on + strand, within GFF2097at 145.990 kb on + strand, within GFF2097at 145.990 kb on + strand, within GFF2097at 145.991 kb on - strand, within GFF2097at 145.991 kb on - strand, within GFF2097at 146.670 kb on + strand, within GFF2098at 146.671 kb on - strand, within GFF2098at 146.965 kb on - strand, within GFF2098at 146.965 kb on - strand, within GFF2098at 146.965 kb on - strand, within GFF2098at 146.965 kb on - strand, within GFF2098at 146.965 kb on - strand, within GFF2098at 146.965 kb on - strand, within GFF2098at 146.965 kb on - strand, within GFF2098at 147.309 kb on + strand, within GFF2098at 147.309 kb on + strand, within GFF2098at 147.387 kb on + strand, within GFF2098at 147.388 kb on - strand, within GFF2098at 147.660 kb on + strand, within GFF2098at 147.660 kb on + strand, within GFF2098at 147.660 kb on + strand, within GFF2098at 147.660 kb on + strand, within GFF2098at 147.912 kb on + strandat 147.913 kb on - strandat 147.913 kb on - strandat 147.913 kb on - strandat 147.913 kb on - strandat 148.249 kb on - strand, within GFF2099at 148.290 kb on + strand, within GFF2099at 148.356 kb on + strand, within GFF2099at 148.356 kb on + strand, within GFF2099at 148.356 kb on + strand, within GFF2099at 148.357 kb on - strand, within GFF2099at 148.395 kb on + strand, within GFF2099at 148.396 kb on - strand, within GFF2099at 148.509 kb on + strand, within GFF2099at 148.509 kb on + strand, within GFF2099at 148.863 kb on + strand, within GFF2099at 148.867 kb on + strand, within GFF2099at 148.867 kb on + strand, within GFF2099at 148.868 kb on - strand, within GFF2099

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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145,699 + GFF2097 0.35 +0.8
145,699 + GFF2097 0.35 +0.2
145,699 + GFF2097 0.35 -1.0
145,700 - GFF2097 0.35 -0.5
145,700 - GFF2097 0.35 +0.2
145,700 - GFF2097 0.35 +0.2
145,769 - GFF2097 0.41 -0.0
145,769 - GFF2097 0.41 -1.2
145,769 - GFF2097 0.41 -0.2
145,769 - GFF2097 0.41 -1.7
145,909 + GFF2097 0.53 +0.0
145,909 + GFF2097 0.53 -0.5
145,909 + GFF2097 0.53 -0.4
145,909 + GFF2097 0.53 +0.3
145,909 + GFF2097 0.53 -0.0
145,909 + GFF2097 0.53 +0.6
145,910 - GFF2097 0.53 +0.0
145,910 - GFF2097 0.53 +0.5
145,910 - GFF2097 0.53 -0.7
145,910 - GFF2097 0.53 -0.6
145,981 + GFF2097 0.60 -0.2
145,981 + GFF2097 0.60 -1.2
145,990 + GFF2097 0.61 +0.1
145,990 + GFF2097 0.61 +0.6
145,990 + GFF2097 0.61 -0.2
145,990 + GFF2097 0.61 -0.5
145,990 + GFF2097 0.61 -0.3
145,991 - GFF2097 0.61 -0.7
145,991 - GFF2097 0.61 -0.4
146,670 + GFF2098 0.13 -0.3
146,671 - GFF2098 0.13 -0.4
146,965 - GFF2098 0.32 -0.4
146,965 - GFF2098 0.32 -0.3
146,965 - GFF2098 0.32 -0.3
146,965 - GFF2098 0.32 -0.4
146,965 - GFF2098 0.32 -0.5
146,965 - GFF2098 0.32 -0.5
146,965 - GFF2098 0.32 -0.1
147,309 + GFF2098 0.54 +0.0
147,309 + GFF2098 0.54 -1.0
147,387 + GFF2098 0.59 -1.4
147,388 - GFF2098 0.59 -0.2
147,660 + GFF2098 0.76 +0.3
147,660 + GFF2098 0.76 +0.1
147,660 + GFF2098 0.76 +0.1
147,660 + GFF2098 0.76 -0.2
147,912 + -0.7
147,913 - -0.2
147,913 - +0.0
147,913 - -0.8
147,913 - +0.4
148,249 - GFF2099 0.17 -0.5
148,290 + GFF2099 0.20 -0.4
148,356 + GFF2099 0.26 +0.0
148,356 + GFF2099 0.26 -0.8
148,356 + GFF2099 0.26 +0.3
148,357 - GFF2099 0.26 +0.5
148,395 + GFF2099 0.29 -1.0
148,396 - GFF2099 0.29 -1.0
148,509 + GFF2099 0.39 +0.6
148,509 + GFF2099 0.39 -0.4
148,863 + GFF2099 0.70 -1.0
148,867 + GFF2099 0.70 +0.3
148,867 + GFF2099 0.70 -0.5
148,868 - GFF2099 0.70 +1.3

Or see this region's nucleotide sequence