Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2032 and GFF2033 are separated by 7 nucleotides GFF2033 and GFF2034 are separated by 107 nucleotides
GFF2032 - Excinuclease ABC subunit A, dimeric form, at 75,064 to 80,907
GFF2032
GFF2033 - no description, at 80,915 to 81,871
GFF2033
GFF2034 - BUG/TctC family periplasmic protein, at 81,979 to 82,965
GFF2034
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 80.089 kb on + strand, within GFF2032 at 80.090 kb on - strand, within GFF2032 at 80.090 kb on - strand, within GFF2032 at 80.108 kb on + strand, within GFF2032 at 80.164 kb on + strand, within GFF2032 at 80.164 kb on + strand, within GFF2032 at 80.164 kb on + strand, within GFF2032 at 80.164 kb on + strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.512 kb on + strand at 80.513 kb on - strand at 80.513 kb on - strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.642 kb on - strand at 80.642 kb on - strand at 80.642 kb on - strand at 81.119 kb on + strand, within GFF2033 at 81.120 kb on - strand, within GFF2033 at 81.323 kb on + strand, within GFF2033 at 81.323 kb on + strand, within GFF2033 at 81.323 kb on + strand, within GFF2033 at 81.323 kb on + strand, within GFF2033 at 81.324 kb on - strand, within GFF2033 at 81.324 kb on - strand, within GFF2033 at 81.324 kb on - strand, within GFF2033 at 81.837 kb on + strand at 81.837 kb on + strand at 81.837 kb on + strand at 81.837 kb on + strand at 81.912 kb on + strand at 81.940 kb on + strand at 81.940 kb on + strand at 81.940 kb on + strand at 81.940 kb on + strand at 81.940 kb on + strand at 81.940 kb on + strand at 81.940 kb on + strand at 81.940 kb on + strand at 81.940 kb on + strand at 81.940 kb on + strand at 81.941 kb on - strand at 81.941 kb on - strand at 81.941 kb on - strand at 81.941 kb on - strand at 82.246 kb on + strand, within GFF2034 at 82.246 kb on + strand, within GFF2034 at 82.444 kb on + strand, within GFF2034 at 82.444 kb on + strand, within GFF2034 at 82.444 kb on + strand, within GFF2034 at 82.444 kb on + strand, within GFF2034 at 82.445 kb on - strand, within GFF2034 at 82.445 kb on - strand, within GFF2034 at 82.445 kb on - strand, within GFF2034 at 82.445 kb on - strand, within GFF2034 at 82.445 kb on - strand, within GFF2034 at 82.445 kb on - strand, within GFF2034 at 82.445 kb on - strand, within GFF2034 at 82.445 kb on - strand, within GFF2034 at 82.603 kb on + strand, within GFF2034 at 82.603 kb on + strand, within GFF2034 at 82.603 kb on + strand, within GFF2034 at 82.621 kb on + strand, within GFF2034 at 82.622 kb on - strand, within GFF2034 at 82.622 kb on - strand, within GFF2034 at 82.622 kb on - strand, within GFF2034
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 80,089 + GFF2032 0.86 -0.0 80,090 - GFF2032 0.86 -1.7 80,090 - GFF2032 0.86 +0.2 80,108 + GFF2032 0.86 -0.4 80,164 + GFF2032 0.87 -0.0 80,164 + GFF2032 0.87 -0.1 80,164 + GFF2032 0.87 -0.2 80,164 + GFF2032 0.87 -0.6 80,165 - GFF2032 0.87 -0.8 80,165 - GFF2032 0.87 +0.7 80,165 - GFF2032 0.87 -0.2 80,165 - GFF2032 0.87 -0.7 80,165 - GFF2032 0.87 -0.5 80,165 - GFF2032 0.87 +0.9 80,165 - GFF2032 0.87 -0.9 80,165 - GFF2032 0.87 +0.6 80,165 - GFF2032 0.87 -0.2 80,165 - GFF2032 0.87 +1.5 80,512 + -0.0 80,513 - +0.2 80,513 - -0.1 80,641 + +0.9 80,641 + +0.2 80,641 + -0.1 80,641 + -0.1 80,641 + -0.7 80,641 + +1.6 80,641 + +0.6 80,641 + -1.3 80,641 + -0.7 80,642 - -0.5 80,642 - +0.1 80,642 - +0.3 81,119 + GFF2033 0.21 +1.2 81,120 - GFF2033 0.21 -0.2 81,323 + GFF2033 0.43 +1.9 81,323 + GFF2033 0.43 +1.9 81,323 + GFF2033 0.43 +0.0 81,323 + GFF2033 0.43 -0.7 81,324 - GFF2033 0.43 +0.6 81,324 - GFF2033 0.43 -0.4 81,324 - GFF2033 0.43 +0.4 81,837 + -0.9 81,837 + -0.4 81,837 + -0.4 81,837 + +0.6 81,912 + -0.4 81,940 + -0.5 81,940 + -1.3 81,940 + -1.9 81,940 + -0.5 81,940 + -0.2 81,940 + -0.4 81,940 + -0.2 81,940 + -0.1 81,940 + -1.4 81,940 + +0.0 81,941 - +0.0 81,941 - +0.1 81,941 - -1.4 81,941 - -1.1 82,246 + GFF2034 0.27 -1.2 82,246 + GFF2034 0.27 -0.1 82,444 + GFF2034 0.47 -0.0 82,444 + GFF2034 0.47 +1.9 82,444 + GFF2034 0.47 +0.0 82,444 + GFF2034 0.47 +0.5 82,445 - GFF2034 0.47 -0.4 82,445 - GFF2034 0.47 -0.1 82,445 - GFF2034 0.47 -0.9 82,445 - GFF2034 0.47 -0.2 82,445 - GFF2034 0.47 -0.0 82,445 - GFF2034 0.47 -0.1 82,445 - GFF2034 0.47 -0.4 82,445 - GFF2034 0.47 -0.8 82,603 + GFF2034 0.63 -0.6 82,603 + GFF2034 0.63 +0.7 82,603 + GFF2034 0.63 +0.3 82,621 + GFF2034 0.65 -0.0 82,622 - GFF2034 0.65 -0.4 82,622 - GFF2034 0.65 -0.4 82,622 - GFF2034 0.65 -0.4
Or see this region's nucleotide sequence