Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF197 and GFF198 overlap by 4 nucleotides GFF198 and GFF199 are separated by 14 nucleotides GFF199 and GFF200 overlap by 1 nucleotides GFF200 and GFF201 are separated by 23 nucleotides
GFF197 - BUG/TctC family periplasmic protein, at 225,644 to 226,612
GFF197
GFF198 - Isochorismate pyruvate-lyase (EC 4.2.99.21), at 226,609 to 226,977
GFF198
GFF199 - Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA, at 226,992 to 227,471
GFF199
GFF200 - Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB, at 227,471 to 228,727
GFF200
GFF201 - Probable ferredoxin oxidoreductase oxidoreductase protein (EC 1.-.-.- ), at 228,751 to 229,740
GFF201
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 226.713 kb on - strand, within GFF198 at 226.916 kb on + strand, within GFF198 at 226.916 kb on + strand, within GFF198 at 226.916 kb on + strand, within GFF198 at 226.916 kb on + strand, within GFF198 at 226.916 kb on + strand, within GFF198 at 226.917 kb on - strand, within GFF198 at 226.917 kb on - strand, within GFF198 at 227.095 kb on + strand, within GFF199 at 227.095 kb on + strand, within GFF199 at 227.096 kb on - strand, within GFF199 at 227.152 kb on + strand, within GFF199 at 227.152 kb on + strand, within GFF199 at 227.153 kb on - strand, within GFF199 at 227.153 kb on - strand, within GFF199 at 227.228 kb on - strand, within GFF199 at 227.228 kb on - strand, within GFF199 at 227.228 kb on - strand, within GFF199 at 227.228 kb on - strand, within GFF199 at 227.230 kb on + strand, within GFF199 at 227.231 kb on - strand, within GFF199 at 227.231 kb on - strand, within GFF199 at 227.263 kb on + strand, within GFF199 at 227.353 kb on + strand, within GFF199 at 227.353 kb on + strand, within GFF199 at 227.354 kb on - strand, within GFF199 at 227.419 kb on + strand, within GFF199 at 227.429 kb on - strand at 227.429 kb on - strand at 227.449 kb on + strand at 227.449 kb on + strand at 227.450 kb on - strand at 227.450 kb on - strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.502 kb on + strand at 227.503 kb on - strand at 227.503 kb on - strand at 227.503 kb on - strand at 227.503 kb on - strand at 227.503 kb on - strand at 227.586 kb on + strand at 228.133 kb on - strand, within GFF200 at 228.178 kb on - strand, within GFF200 at 228.387 kb on + strand, within GFF200 at 228.387 kb on + strand, within GFF200 at 228.388 kb on - strand, within GFF200 at 228.388 kb on - strand, within GFF200 at 228.388 kb on - strand, within GFF200 at 228.588 kb on + strand, within GFF200 at 228.588 kb on + strand, within GFF200 at 228.588 kb on + strand, within GFF200 at 228.588 kb on + strand, within GFF200 at 228.588 kb on + strand, within GFF200 at 228.588 kb on + strand, within GFF200 at 228.588 kb on + strand, within GFF200 at 228.588 kb on + strand, within GFF200 at 228.588 kb on + strand, within GFF200 at 228.589 kb on - strand, within GFF200 at 228.589 kb on - strand, within GFF200 at 228.589 kb on - strand, within GFF200 at 228.606 kb on + strand at 228.607 kb on - strand at 228.651 kb on + strand at 228.652 kb on - strand at 228.746 kb on + strand at 228.746 kb on + strand at 228.746 kb on + strand at 228.767 kb on + strand at 228.767 kb on + strand at 228.861 kb on - strand, within GFF201 at 228.861 kb on - strand, within GFF201 at 229.020 kb on - strand, within GFF201 at 229.021 kb on + strand, within GFF201 at 229.021 kb on + strand, within GFF201 at 229.022 kb on - strand, within GFF201 at 229.022 kb on - strand, within GFF201 at 229.169 kb on + strand, within GFF201 at 229.170 kb on - strand, within GFF201 at 229.170 kb on - strand, within GFF201 at 229.230 kb on + strand, within GFF201 at 229.350 kb on - strand, within GFF201 at 229.350 kb on - strand, within GFF201 at 229.535 kb on + strand, within GFF201 at 229.535 kb on + strand, within GFF201 at 229.536 kb on - strand, within GFF201 at 229.643 kb on + strand at 229.644 kb on - strand at 229.644 kb on - strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.726 kb on + strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand at 229.727 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 226,713 - GFF198 0.28 -0.1 226,916 + GFF198 0.83 +0.1 226,916 + GFF198 0.83 +0.2 226,916 + GFF198 0.83 +0.5 226,916 + GFF198 0.83 -0.8 226,916 + GFF198 0.83 +0.2 226,917 - GFF198 0.83 +0.5 226,917 - GFF198 0.83 +1.1 227,095 + GFF199 0.21 +0.5 227,095 + GFF199 0.21 -0.1 227,096 - GFF199 0.22 +0.3 227,152 + GFF199 0.33 +4.2 227,152 + GFF199 0.33 -2.0 227,153 - GFF199 0.34 -0.1 227,153 - GFF199 0.34 +0.6 227,228 - GFF199 0.49 +0.0 227,228 - GFF199 0.49 -0.9 227,228 - GFF199 0.49 +1.3 227,228 - GFF199 0.49 -0.3 227,230 + GFF199 0.50 +0.5 227,231 - GFF199 0.50 -0.3 227,231 - GFF199 0.50 +0.5 227,263 + GFF199 0.56 -0.3 227,353 + GFF199 0.75 +0.3 227,353 + GFF199 0.75 -0.9 227,354 - GFF199 0.75 -0.5 227,419 + GFF199 0.89 -0.6 227,429 - -1.1 227,429 - -0.6 227,449 + +2.9 227,449 + +0.8 227,450 - -0.8 227,450 - -0.0 227,502 + +0.1 227,502 + -1.2 227,502 + -1.9 227,502 + -1.8 227,502 + +0.6 227,502 + +1.1 227,502 + +0.6 227,502 + -0.0 227,502 + -0.1 227,502 + -0.1 227,502 + +0.1 227,502 + -1.3 227,502 + +0.9 227,503 - +0.0 227,503 - -0.7 227,503 - -0.2 227,503 - -1.5 227,503 - -0.5 227,586 + -0.0 228,133 - GFF200 0.53 +0.1 228,178 - GFF200 0.56 +0.7 228,387 + GFF200 0.73 -1.1 228,387 + GFF200 0.73 +0.9 228,388 - GFF200 0.73 +0.9 228,388 - GFF200 0.73 +0.3 228,388 - GFF200 0.73 +0.8 228,588 + GFF200 0.89 -0.5 228,588 + GFF200 0.89 +0.5 228,588 + GFF200 0.89 +0.6 228,588 + GFF200 0.89 -0.9 228,588 + GFF200 0.89 +0.2 228,588 + GFF200 0.89 +0.4 228,588 + GFF200 0.89 -1.3 228,588 + GFF200 0.89 -0.1 228,588 + GFF200 0.89 +1.3 228,589 - GFF200 0.89 -1.0 228,589 - GFF200 0.89 -1.6 228,589 - GFF200 0.89 -0.7 228,606 + -0.7 228,607 - +0.2 228,651 + -1.3 228,652 - -1.8 228,746 + -0.3 228,746 + -0.4 228,746 + +0.1 228,767 + +0.9 228,767 + -0.4 228,861 - GFF201 0.11 +0.2 228,861 - GFF201 0.11 +2.5 229,020 - GFF201 0.27 +0.0 229,021 + GFF201 0.27 -0.6 229,021 + GFF201 0.27 -2.4 229,022 - GFF201 0.27 +0.3 229,022 - GFF201 0.27 -0.2 229,169 + GFF201 0.42 -1.8 229,170 - GFF201 0.42 -1.6 229,170 - GFF201 0.42 -1.1 229,230 + GFF201 0.48 +0.4 229,350 - GFF201 0.61 -0.2 229,350 - GFF201 0.61 -0.6 229,535 + GFF201 0.79 +0.7 229,535 + GFF201 0.79 -0.1 229,536 - GFF201 0.79 +0.6 229,643 + -0.7 229,644 - +0.8 229,644 - +1.3 229,726 + +0.2 229,726 + +0.6 229,726 + -1.8 229,726 + +0.0 229,726 + +0.3 229,726 + +1.1 229,726 + -0.1 229,726 + -0.6 229,726 + -1.0 229,726 + -0.7 229,726 + -1.1 229,726 + -1.1 229,726 + -0.4 229,726 + -0.1 229,726 + +1.1 229,726 + -1.5 229,727 - -1.3 229,727 - +1.0 229,727 - +0.3 229,727 - +0.1 229,727 - -0.0 229,727 - +0.7 229,727 - -0.1 229,727 - +1.9 229,727 - -0.2 229,727 - -0.4 229,727 - -0.1 229,727 - -0.9 229,727 - +0.1 229,727 - -0.9 229,727 - -0.9 229,727 - -1.2 229,727 - +0.1 229,727 - -0.1 229,727 - +0.0 229,727 - -0.6 229,727 - +0.4 229,727 - +0.9 229,727 - -0.5
Or see this region's nucleotide sequence