Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1996 and GFF1997 are separated by 19 nucleotides GFF1997 and GFF1998 are separated by 147 nucleotides
GFF1996 - Indoleacetamide hydrolase (EC 3.5.1.-), at 38,969 to 40,489
GFF1996
GFF1997 - no description, at 40,509 to 41,273
GFF1997
GFF1998 - Two-component system sensor histidine kinase, at 41,421 to 43,208
GFF1998
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1 at 39.509 kb on + strand, within GFF1996 at 39.833 kb on + strand, within GFF1996 at 39.833 kb on + strand, within GFF1996 at 39.833 kb on + strand, within GFF1996 at 39.834 kb on - strand, within GFF1996 at 39.834 kb on - strand, within GFF1996 at 39.834 kb on - strand, within GFF1996 at 39.974 kb on + strand, within GFF1996 at 40.001 kb on + strand, within GFF1996 at 40.001 kb on + strand, within GFF1996 at 40.001 kb on + strand, within GFF1996 at 40.014 kb on - strand, within GFF1996 at 40.145 kb on + strand, within GFF1996 at 40.146 kb on - strand, within GFF1996 at 40.146 kb on - strand, within GFF1996 at 40.188 kb on + strand, within GFF1996 at 40.188 kb on + strand, within GFF1996 at 40.188 kb on + strand, within GFF1996 at 40.188 kb on + strand, within GFF1996 at 40.188 kb on + strand, within GFF1996 at 40.188 kb on + strand, within GFF1996 at 40.189 kb on - strand, within GFF1996 at 40.189 kb on - strand, within GFF1996 at 40.189 kb on - strand, within GFF1996 at 40.189 kb on - strand, within GFF1996 at 40.189 kb on - strand, within GFF1996 at 40.189 kb on - strand, within GFF1996 at 40.189 kb on - strand, within GFF1996 at 40.189 kb on - strand, within GFF1996 at 40.487 kb on + strand at 40.487 kb on + strand at 40.591 kb on + strand, within GFF1997 at 40.591 kb on + strand, within GFF1997 at 40.591 kb on + strand, within GFF1997 at 40.592 kb on - strand, within GFF1997 at 40.592 kb on - strand, within GFF1997 at 40.592 kb on - strand, within GFF1997 at 40.592 kb on - strand, within GFF1997 at 40.592 kb on - strand, within GFF1997 at 41.269 kb on + strand at 41.270 kb on - strand at 41.270 kb on - strand at 41.270 kb on - strand at 41.300 kb on + strand at 41.313 kb on + strand at 41.314 kb on - strand at 41.487 kb on + strand at 41.487 kb on + strand at 41.544 kb on + strand at 41.544 kb on + strand at 41.544 kb on + strand at 41.544 kb on + strand at 41.544 kb on + strand at 41.544 kb on + strand at 41.545 kb on - strand at 41.545 kb on - strand at 41.545 kb on - strand at 41.829 kb on + strand, within GFF1998 at 41.829 kb on + strand, within GFF1998 at 41.829 kb on + strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.844 kb on + strand, within GFF1998 at 41.844 kb on + strand, within GFF1998 at 41.844 kb on + strand, within GFF1998 at 41.845 kb on - strand, within GFF1998 at 41.845 kb on - strand, within GFF1998 at 41.845 kb on - strand, within GFF1998 at 42.028 kb on - strand, within GFF1998 at 42.028 kb on - strand, within GFF1998
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 39,509 + GFF1996 0.36 +0.6 39,833 + GFF1996 0.57 -0.4 39,833 + GFF1996 0.57 -0.0 39,833 + GFF1996 0.57 +0.0 39,834 - GFF1996 0.57 +0.2 39,834 - GFF1996 0.57 +0.1 39,834 - GFF1996 0.57 -0.3 39,974 + GFF1996 0.66 +0.0 40,001 + GFF1996 0.68 +1.1 40,001 + GFF1996 0.68 -0.6 40,001 + GFF1996 0.68 +0.8 40,014 - GFF1996 0.69 +1.7 40,145 + GFF1996 0.77 -0.5 40,146 - GFF1996 0.77 -0.7 40,146 - GFF1996 0.77 -1.1 40,188 + GFF1996 0.80 -0.8 40,188 + GFF1996 0.80 -0.4 40,188 + GFF1996 0.80 -0.2 40,188 + GFF1996 0.80 +0.1 40,188 + GFF1996 0.80 +0.2 40,188 + GFF1996 0.80 -0.2 40,189 - GFF1996 0.80 +0.2 40,189 - GFF1996 0.80 -0.5 40,189 - GFF1996 0.80 -1.1 40,189 - GFF1996 0.80 +0.2 40,189 - GFF1996 0.80 -0.3 40,189 - GFF1996 0.80 +0.8 40,189 - GFF1996 0.80 +0.6 40,189 - GFF1996 0.80 -0.1 40,487 + -0.4 40,487 + -0.0 40,591 + GFF1997 0.11 -0.3 40,591 + GFF1997 0.11 +0.3 40,591 + GFF1997 0.11 -0.4 40,592 - GFF1997 0.11 -0.5 40,592 - GFF1997 0.11 +0.0 40,592 - GFF1997 0.11 -0.9 40,592 - GFF1997 0.11 -0.9 40,592 - GFF1997 0.11 +0.1 41,269 + -0.4 41,270 - +0.4 41,270 - +0.2 41,270 - +0.9 41,300 + -0.5 41,313 + -0.3 41,314 - -0.3 41,487 + -0.2 41,487 + -0.9 41,544 + -0.3 41,544 + -0.4 41,544 + -1.3 41,544 + +0.2 41,544 + +0.4 41,544 + -0.2 41,545 - +0.5 41,545 - +0.2 41,545 - -0.1 41,829 + GFF1998 0.23 +0.7 41,829 + GFF1998 0.23 -0.8 41,829 + GFF1998 0.23 +0.4 41,830 - GFF1998 0.23 -0.5 41,830 - GFF1998 0.23 -0.7 41,830 - GFF1998 0.23 +0.8 41,830 - GFF1998 0.23 +0.1 41,830 - GFF1998 0.23 +0.7 41,830 - GFF1998 0.23 +0.0 41,830 - GFF1998 0.23 +0.1 41,830 - GFF1998 0.23 +0.9 41,844 + GFF1998 0.24 +0.7 41,844 + GFF1998 0.24 +0.3 41,844 + GFF1998 0.24 +1.5 41,845 - GFF1998 0.24 +0.6 41,845 - GFF1998 0.24 -0.3 41,845 - GFF1998 0.24 -0.1 42,028 - GFF1998 0.34 +0.2 42,028 - GFF1998 0.34 +0.3
Or see this region's nucleotide sequence